Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq11610 86.0 1e-14 seq49122 75.2 2e-11 >seq11610 Length=42292 Score = 86.0 bits (94), Expect = 1e-14 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||| | || |||||| |||||||| | Sbjct 27251 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGTAGAGTGCTTTCGCCGTTGGTGTTCTTT 27192 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||| ||||||||||||| ||| | |||||| |||| | | | |||| | Sbjct 27191 CCGATCTCTATGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCTTACCGTACTCCAA 27132 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 | |||||| | || | | ||||||||||| | ||| || | ||||| Sbjct 27131 CTTGATAGTTTCCACCGCCTGTTCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 27072 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGC 232 || |||||| | |||||| |||||| | | |||||||| ||||| Sbjct 27071 AGCCACCTACAGACGCTTTACGCCCAATCATTTCGGATAACACTTGC 27025 >seq49122 Length=2671 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 207 ACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGT 266 ||||||| | |||||||||||||||| || || ||| |||||||||| |||| ||| Sbjct 225 ACCCAATCATTCCGGATAACGCTTGCATGCTCTGTCTTAACGCGGCTGCTAGCACAAAGT 166 Query 267 TAGCCGTGGCTTATTCCTCAGGTA 290 ||| || ||||||||| ||| || Sbjct 165 TAGTCGATGCTTATTCCCCAGATA 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825688007774