Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq22161 136 4e-30 seq12195 120 3e-25 seq16230 107 2e-21 seq35027 100 3e-19 seq3167 100 3e-19 seq47658 84.2 2e-14 >seq22161 Length=9464 Score = 136 bits (150), Expect = 4e-30 Identities = 140/178 (79%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| ||||||||||||||| |||| | |||||||| ||||| Sbjct 7169 TTACTTTGAAGAAATTAGAGTGTTCAAAGCAGGCCTAAGCTCTGTATACATTAGCATGGG 7110 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 || | | |||||| | |||| ||||| ||| | || | ||| || || ||||| | Sbjct 7109 ATTACATTATAGGAT-TCCGGTCCTATTGTGTTGTCTT-TGGGATCGGA-GTCATGATTA 7053 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||||||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 7052 ACAGGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 6995 >seq12195 Length=26436 Score = 120 bits (132), Expect = 3e-25 Identities = 141/187 (75%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACAT 63 |||| || |||||||||| ||||||| | | |||||| |||||| | | | ||| || Sbjct 22263 CCAGCGCTGTTACTTTGAAGAAATTAGGGTGCTCAAAGTAGGCCTAAGTTTTGTATAGAT 22322 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123 || ||||| |||| | |||||| | |||| ||||| ||| || | ||| || | Sbjct 22323 TAGCATGGGATAACATTATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-G 22380 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| || | ||||||||||||| | ||||| || |||| |||||||||||||| Sbjct 22381 TAATGATTAACATGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTG 22440 Query 184 GATTTAT 190 ||||||| Sbjct 22441 GATTTAT 22447 >seq16230 Length=13717 Score = 107 bits (118), Expect = 2e-21 Identities = 133/178 (75%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||||||| || ||||| ||| | ||||||||||||| |||| ||| ||||| | || Sbjct 7053 TTACTTTAAAGAAATTTGAGTGCTCAAAGCAGGCCTAAGCTCTGAACTCATTAGTAAGGG 7112 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||| | | |||| ||||| ||| || | | | || |||||||| | Sbjct 7113 ATAACATTATAGTAT-TCCGGTCCTATTGTGTTGGCCTTCGGTATCGGA-GTAATGATTA 7170 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||||||||||||| | |||| || |||||||||||||||||||||||||| Sbjct 7171 ACAGGGATAGTCGGGGGCATTCATATTTCATAGTCAAAGGTGAAATTCTTGGATTTAT 7228 >seq35027 Length=5377 Score = 100 bits (110), Expect = 3e-19 Identities = 133/181 (73%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | || |||||||| | ||| | |||||||| ||| Sbjct 3336 CTGTTACTTTGAAGAAATTAGAGTGCTCTAAGCAGGCATAAGCTTTGTATACATTAGCAT 3395 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | || || | |||| ||||| ||| || | ||| || ||||| Sbjct 3396 GGGATAACATTATTAGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATAG 3453 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||| | ||||||| | ||||| || |||| |||||||||||||||||| | Sbjct 3454 TTAATAGGGACAATCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTCA 3513 Query 190 T 190 | Sbjct 3514 T 3514 >seq3167 Length=41999 Score = 100 bits (110), Expect = 3e-19 Identities = 133/181 (73%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCAT 69 || |||||||||| ||||||||| | ||||||||||||| | | |||||||| ||| Sbjct 30009 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAGGCCTAATCTTTTTATACATTAGCAT 29950 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | ||||| | |||| ||||| ||| || | ||| || ||| ||| Sbjct 29949 GGGATAACATTTTAGGA-TTCCGGTCCTATTGTGTTGGCCTTCGGGATCG-GAGTACTGA 29892 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| | ||||||| | |||| | |||| |||||||||||||||||||| Sbjct 29891 TTAACAAGGACATTCGGGGGCATTCATATTTCGTAGTCAGAGGTGAAATTCTTGGATTTA 29832 Query 190 T 190 | Sbjct 29831 T 29831 >seq47658 Length=3143 Score = 84.2 bits (92), Expect = 2e-14 Identities = 129/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | ||| |||| || || | | | || ||||| ||| Sbjct 2448 CTGTTACTTTGAAGAAATTAGAGTGCTCAGAGCAAGCATTAGATTTGTATTCATTAGCAT 2389 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||| | |||| | | ||| | ||||||| Sbjct 2388 GGGATAACATTATAGGAT-TCCGGTCCTACTGTGTAAGCCTTCGGGATCAGA-GTAATGA 2331 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 | || | ||| ||||||||| | |||| || ||||| |||||||||||||||| Sbjct 2330 TTAACAAGGACAGTCGGGGGCATTCATATTTCATAGTCAACA-TGAAATTCTTGGATTT 2273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510077533760