Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq39059 232 1e-58 seq176 223 5e-56 seq10280 138 2e-30 seq12556 136 6e-30 seq17568 120 5e-25 seq5026 89.7 8e-16 seq19036 87.8 3e-15 seq36829 82.4 1e-13 seq323 75.2 2e-11 seq1599 73.4 6e-11 >seq39059 Length=4191 Score = 232 bits (256), Expect = 1e-58 Identities = 201/248 (81%), Gaps = 1/248 (0%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTG 87 |||| |||||| ||| |||| ||| |||||| | | | | |||| | ||||||| Sbjct 4017 CAGCAGTTATCCGCTCCGTACTTGGCTACCCAGCATTTACCGTGGGCACGATAACTGGTA 3958 Query 88 CACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT 147 |||||||||| |||| ||||||||||||||||||| ||| || ||||||||| || Sbjct 3957 CACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTA 3898 Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207 |||||||| |||||| |||| |||||||||| |||||||||||||||||||| ||| || Sbjct 3897 ACGCCCACACCGGATATGGACTGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACC 3838 Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGC 267 ||||||||||||||||| |||||||||||| || |||| |||| | ||| | | |||| Sbjct 3837 TCTTTAATGGGCGAACAACCCAACCCTTGGAACATACTACAGCTCTAGGTGGCAAAGAGC 3778 Query 268 CGACATCG 275 |||||||| Sbjct 3777 CGACATCG 3770 >seq176 Length=110793 Score = 223 bits (246), Expect = 5e-56 Identities = 206/260 (79%), Gaps = 1/260 (0%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 ||||||||| ||||| |||||| |||| |||| ||| |||||| | | | | |||| Sbjct 45809 CTTAGATGCTTTCAGTAGTTATCCGCTCCACACTTGGCTACCCAGCGTTTACCGTGGGCA 45750 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | || |||| ||||||||| |||| || |||||||||||||||| ||| | |||| Sbjct 45749 TGATAATTGGTAAACCAGAGGTGCGTCCTTCTCGGTCCTCTCGTACTATGGAAATGTCCT 45690 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| | || ||||| || |||||| |||| ||| |||||| ||||||||||||||| Sbjct 45689 CTCAATTCTCTAACGCCAACACCGGATATGGACTGAAATGTCTCACGACGTTCTGAACCC 45630 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | |||| || || | |||||||||||||| |||||||||||| || |||| |||| |||| Sbjct 45629 AACTCGTGTACCGCCTTAATGGGCGAACATCCCAACCCTTGGAACATACTACAGCTCCAG 45570 Query 256 GATGAGACGAGCCGACATCG 275 | | || |||||||||||| Sbjct 45569 GTGGCGAAGAGCCGACATCG 45550 >seq10280 Length=30110 Score = 138 bits (152), Expect = 2e-30 Identities = 102/118 (86%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217 |||||| ||||||||||||||| |||||||||||||||||||| | | || ||||||||| Sbjct 11431 CGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCAC-TACCACTTTAATGG 11489 Query 218 GCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||| |||||||||||| || |||| || | ||||| | || |||||||||||| Sbjct 11490 GCGAACAACCCAACCCTTGGAACATACTACAACTCCAGGTGGCGAAGAGCCGACATCG 11547 >seq12556 Length=17404 Score = 136 bits (150), Expect = 6e-30 Identities = 167/228 (73%), Gaps = 9/228 (4%) Strand=Plus/Minus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTG-----CACCAGAGGTTTGT 101 ||||||| ||| || ||| |||||| ||||||||| ||||| ||||| | Sbjct 4903 AACTTAGTTTCAAGGCGTTGCTATTGGCATAACAACTGGTATGGTACACCATAGGTTGGC 4844 Query 102 CCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCC----TACGCCCACGA 157 ||| || |||||||||||||| || ||||||| || | ||| || || || Sbjct 4843 CCAACCTAGTCCTCTCGTACTATAGATGGCTCCTCGCATTTCTCCCTGAAACACCAACAG 4784 Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217 |||||| |||||| |||||| ||| |||| |||||||||| ||| || || ||| | Sbjct 4783 TAGATAGGTACCGAATTGTCTCACGATGTTCCAAACCCAGCTCACGTACCACTGGAATCG 4724 Query 218 GCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 ||||||| || |||||||| ||||| ||| | |||||||||| || || Sbjct 4723 GCGAACAACCGAACCCTTGAGACCTTCTTAAACCCCAGGATGTGATGA 4676 >seq17568 Length=25922 Score = 120 bits (132), Expect = 5e-25 Identities = 98/118 (83%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217 |||||| ||||||||||||||| |||||||||||||||||||| ||| || ||||||||| Sbjct 25665 CGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACC-CTTTAATGG 25607 Query 218 GCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | ||||| | |||||| || || |||| || | ||| | | || |||||||||||| Sbjct 25606 GGGAACAACTCAACCCCTGAAACATACTACAACTCCAAGTGGCGAAGAGCCGACATCG 25549 >seq5026 Length=66720 Score = 89.7 bits (98), Expect = 8e-16 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 |||||| ||| ||| || ||| ||| |||||||| || |||||||||||||| ||||| | Sbjct 34589 AACCCAACTCACGTACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAAC 34648 Query 251 CCCAGGATGAGACGAGCCGACATC 274 ||||||||| || ||| ||| ||| Sbjct 34649 CCCAGGATGTGATGAGTCGATATC 34672 >seq19036 Length=11407 Score = 87.8 bits (96), Expect = 3e-15 Identities = 115/158 (73%), Gaps = 5/158 (3%) Strand=Plus/Minus Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 ||||| |||| || ||||| ||||| ||||| | | ||||||||||| | ||| | Sbjct 8519 TGGCATAACAATCTGTACACCATAGGTTGGTCCAACTCAGTCCTCTCGTA-TTAGGGTTG 8461 Query 131 CTCCTCTCAAATTTCC----TACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGT 186 ||||| || | ||| || || | | |||||| ||| ||||||||| |||||| Sbjct 8460 TTCCTCGCAGTTGTCCCTCTAACACCAAAGGTAGATAGGAACCAAACTGTCTCACGACGT 8401 Query 187 TCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224 ||| |||||| ||| || || ||| ||| |||||||| Sbjct 8400 TCTAAACCCAACTCATGTACCACTTGAATCGGCGAACA 8363 >seq36829 Length=17823 Score = 82.4 bits (90), Expect = 1e-13 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 166 GACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAG 225 |||| ||||||| | ||||||||| ||| || || ||| || ||||| |||| |||| Sbjct 16682 GACCAAACTGTCACACGACGTTCTAAACTCACCTTACGTACCGCTTTAGTGGGTGAACTA 16741 Query 226 CCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||| || |||| | | ||||| | || || ||| ||||| Sbjct 16742 CCCAACCCTTGGAACATACTATAACTCCAGGTGGCGAAGATCCGGCATCG 16791 >seq323 Length=113154 Score = 75.2 bits (82), Expect = 2e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 177 CTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTG 236 ||| ||||||||| |||||| ||| ||| || ||| ||| |||||||| || |||||||| Sbjct 80935 CTCACGACGTTCTAAACCCAACTCACGTACCACTTGAATCGGCGAACAACCAAACCCTTG 80876 Query 237 GGACCT 242 |||||| Sbjct 80875 GGACCT 80870 >seq1599 Length=69933 Score = 73.4 bits (80), Expect = 6e-11 Identities = 79/107 (74%), Gaps = 11/107 (10%) Strand=Plus/Plus Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207 |||||||| ||||| |||||||| |||||| ||||||| ||||||| ||| Sbjct 13847 ACGCCCACATTGGATATGGACCGAAATGTCTCACGACGTTTTGAACCCCGCT-------- 13898 Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 ||||||||| |||| | |||||||||| | |||| || | ||| Sbjct 13899 ---TTAATGGGCAAACAACTCAACCCTTGGAGCATACTGCATCTCCA 13942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777868238984