Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq189388 156 1e-35 seq22879 111 4e-22 seq369 91.5 4e-16 seq2212 80.6 6e-13 seq20428 73.4 1e-10 >seq189388 Length=17252 Score = 156 bits (172), Expect = 1e-35 Identities = 130/159 (82%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| |||||| || |||| ||| ||||| |||||||||| ||| |||||||| Sbjct 166 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 107 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||| ||||| |||||| || |||||||||||| |||||||||||| |||||| Sbjct 106 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 47 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACC 178 |||||||||| | ||| | | || ||| ||| ||||| Sbjct 46 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACC 8 >seq22879 Length=9061 Score = 111 bits (122), Expect = 4e-22 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136 ||||||||||||||||||||||||||| |||| ||||||| |||||||||||| |||||| Sbjct 4874 CCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAGTGTGGCTGATCATCC 4815 Query 137 TCTCAGACCAGCTA 150 |||| ||||||||| Sbjct 4814 TCTCGGACCAGCTA 4801 >seq369 Length=91026 Score = 91.5 bits (100), Expect = 4e-16 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 68 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127 ||| |||||||||||||||| || || |||||| || ||||||||||| |||||||||| Sbjct 60075 CAAGATTCCCCACTGCTGCCCCCTGTGGGAGTCCGGGTCGTGTCTCAGTCCCAGTGTGGC 60134 Query 128 TGGTCATCCTCTCAGACCAGCTA 150 || |||||| |||||||||| Sbjct 60135 TGATCATCCGAAAAGACCAGCTA 60157 >seq2212 Length=49406 Score = 80.6 bits (88), Expect = 6e-13 Identities = 66/79 (84%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 ||||| | || |||||||||| | ||||||| ||||||||||| ||||||||||| | | Sbjct 18457 CATTGCGAAAAATTCCCCACTACGGCCTCCCATAGGAGTCTGGGTCGTGTCTCAGTCCTA 18398 Query 121 GTGTGGCTGGTCAT-CCTC 138 |||||| || |||| |||| Sbjct 18397 GTGTGGATGATCATACCTC 18379 >seq20428 Length=10514 Score = 73.4 bits (80), Expect = 1e-10 Identities = 77/99 (78%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 60 CCATTGTG--CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTT 117 |||||||| ||| |||||||||| ||||| | || |||||| || ||||||||||| Sbjct 3120 CCATTGTGTCCAAGATTCCCCACTACTGCC-CTTGTGGGAGTCCGGGACGTGTCTCAGTC 3178 Query 118 CCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATC 156 |||||||| || |||||| |||||| ||| | ||| Sbjct 3179 CCAGTGTGAATGATCATCCAAAAAGACCACCTATGTATC 3217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1217662050944