Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq189388 210 7e-52 seq22879 93.3 1e-16 seq2837 93.3 1e-16 seq49122 80.6 8e-13 >seq189388 Length=17252 Score = 210 bits (232), Expect = 7e-52 Identities = 211/272 (78%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 177 TTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGC 236 ||||| |||||| |||| |||||| | | ||| |||| | || || ||||| || Sbjct 1 TTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGC 60 Query 237 CACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCA 296 |||| ||| |||||||||||| || ||||| ||||| |||||||||||||||| ||| | Sbjct 61 CACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGA 120 Query 297 CAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG--CCTTCGGGTCGT 354 |||||||| |||||| ||| |||||| |||||||| || ||||| | | | | || Sbjct 121 CAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGTAATGCCGCTTGT 180 Query 355 AAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACT 412 |||||||| || | | | ||| ||||| | ||| ||||| |||||||||||||||| Sbjct 181 AAAGCTCTTTCGTTGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACT 240 Query 413 ACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444 |||||||||||||||||||| ||| ||||| Sbjct 241 CCGTGCCAGCAGCCGCGGTAAGACGGGGGGGG 272 >seq22879 Length=9061 Score = 93.3 bits (102), Expect = 1e-16 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 207 ATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTC 266 ||||||||| | | |||||| ||||| |||||| ||| ||||||| |||| ||| |||| Sbjct 4796 ATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGATACGGCCCAGACTC 4855 Query 267 CTACGGGAGGCAGCAGTGG 285 ||||||||||||||||||| Sbjct 4856 CTACGGGAGGCAGCAGTGG 4874 >seq2837 Length=53573 Score = 93.3 bits (102), Expect = 1e-16 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 275 GGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGC 334 |||||||||||||||| ||| |||||||| |||||| ||| |||||| || ||||| Sbjct 7766 GGCAGCAGTGGGGAATCTTGGGCAATGGGCGAAAGCCCGATCCAGCAATATCGTGTGAGT 7707 Query 335 GATGAAGG--CCTTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTT 390 || ||||| | | | | |||||||||| || | | | ||| ||||| ||| Sbjct 7706 GAAGAAGGGTAATGCCGCTTGTAAAGCTCTTTCGTTGAGTGCGCGATCATGACAAGACTC 7647 Query 391 GAGGAGGAAGCCCCGGCTAACT 412 ||||| |||||||||||||||| Sbjct 7646 GAGGAAGAAGCCCCGGCTAACT 7625 >seq49122 Length=2671 Score = 80.6 bits (88), Expect = 8e-13 Identities = 98/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT--AATGACGGTACTTGAGGA 395 ||||||| || ||||| || ||| | | | |||||| |||||||||| || ||| Sbjct 92 GAAGGCCCACGAGTCGTGAACTTCTTTTCCCGGAGAAGATTTAATGACGGTATCTGGGGA 151 Query 396 GGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATC 455 |||| || |||||| |||| |||||||||| ||| || || || ||||||||| Sbjct 152 ATAAGCATCGACTAACTTTGTGCTAGCAGCCGCGTTAAGACAGAGCATGCAAGCGTTATC 211 Query 456 CGGAATTACTGGG 468 |||||| | |||| Sbjct 212 CGGAATGATTGGG 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1491795392256