Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq11610 154 4e-35 seq8344 143 6e-32 seq28034 105 2e-20 seq189388 78.8 2e-12 seq35238 73.4 9e-11 >seq11610 Length=42292 Score = 154 bits (170), Expect = 4e-35 Identities = 198/273 (73%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAG 118 || || |||||||| ||| | ||||||||||| || |||||||| || ||||||| | Sbjct 27025 GCAAGTGTTATCCGAAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCC 27084 Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGA 178 || ||| | | |||||||||| | || | |||||| | | |||| | | | Sbjct 27085 GTCAAATCCCAGGGCTCAACCCTGAACAGGCGGTGGAAACTATCAAGTTGGAGTACGGTA 27144 Query 179 GGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGT 238 ||||| |||||| | ||| ||||||||||||| |||| || | | |||||||| Sbjct 27145 AGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATAGAGATCGGAAAGAACACCAAC 27204 Query 239 GGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAAC 298 |||||| || | |||| | | |||||||||||| ||||||| ||||||| || Sbjct 27205 GGCGAAAGCACTCTACTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAAT 27264 Query 299 AGGATTAGATACCCTGGTAGTCCACGCCGTAAA 331 ||||||||||||| ||||||| |||||||| Sbjct 27265 GGGATTAGATACCCCAGTAGTCCTAGCCGTAAA 27297 >seq8344 Length=33479 Score = 143 bits (158), Expect = 6e-32 Identities = 187/256 (73%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 154 GAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATG 213 |||||| | ||| |||| | | ||||| | |||||| | || |||||||||||| Sbjct 14001 GAAACTACCAAGCTGGAGTACGGTAGGGGTAGAGGGAATTTCCGTTGGAGCGGTGAAATG 13942 Query 214 CGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTG 273 | || | || | | |||||||| |||||| || |||||| | | |||||||||| Sbjct 13941 CATAAAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTG 13882 Query 274 AGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACG 333 || ||||||| ||||||| || |||||||||||||| ||||||| |||||||||| Sbjct 13881 AGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCCTAGTAGTCCTAGCCGTAAACG 13822 Query 334 ATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTA 392 ||| |||||||| | | | ||| || | | | ||| | ||| ||||| || ||| Sbjct 13821 ATGGATACTAGGCG-CTGTGCGTATCGACCCGTGCAGTGTTGTAGCTAACGCGTTAGGTA 13763 Query 393 TTCCACCTGGGGAGTA 408 | ||||||| |||||| Sbjct 13762 TCCCACCTGAGGAGTA 13747 >seq28034 Length=36734 Score = 105 bits (116), Expect = 2e-20 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 166 CTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAG 225 || |||| | | ||||||| |||||| | ||| ||||||||||||| |||| || | Sbjct 21265 CTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATAGAGATCGG 21206 Query 226 GAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGC 285 | |||||||| |||||| || | |||| | | |||||||||||| ||||||| Sbjct 21205 AAAGAACACCACCGGCGAAAGCACTCTACTGGGCCGACACTGACACTGAGAGACGAAAGC 21146 Query 286 GTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAA 331 ||||||| || ||| ||||||||| |||||| |||||||| Sbjct 21145 TAGGGGAGCGAATGGGAGTAGATACCCCAATAGTCCTAGCCGTAAA 21100 >seq189388 Length=17252 Score = 78.8 bits (86), Expect = 2e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 59 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||| Sbjct 215 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGG 272 >seq35238 Length=5320 Score = 73.4 bits (80), Expect = 9e-11 Identities = 112/160 (70%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 45 GTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 |||| || ||| || |||||||| | ||| | ||||||||||| || |||||||| Sbjct 5161 GTAAGACCGAGGATGCAAGCGTTATTCAAAATGATTGGGCGTAAAGCGTATGTAGGTGGC 5220 Query 105 TTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGG 164 || |||||| | || ||| | | || ||||||| || || |||||||| | Sbjct 5221 TTTTTAAGTTCGCCGTCAAATCCCAGGGTTCAACCCTGGACAGGCGGTTGAAACTACCAA 5280 Query 165 GCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGC 204 ||| |||| | | ||||||| |||||| | ||| ||| Sbjct 5281 GCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGC 5320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1198536468992