Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq12195 275 1e-71 seq9044 271 1e-70 seq30953 269 5e-70 seq21734 264 2e-68 seq15876 260 3e-67 seq11701 248 2e-63 seq3167 248 2e-63 seq8453 176 8e-42 seq4587 131 3e-28 seq13709 125 1e-26 seq21138 116 7e-24 >seq12195 Length=26436 Score = 275 bits (304), Expect = 1e-71 Identities = 218/258 (84%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||||||| | || || | | |||||||||||||||||||||||||||| Sbjct 13003 GCTTCTTAGAGGGACTATGGCCTTCAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTG 13062 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||| |||||||| ||| ||||||||||||| | ||||||| |||| Sbjct 13063 ATGCCCTTAGATATTCTGGGC--CACACGCGCTACACTGATGTATTAAACGAGTCTATCA 13120 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||| ||||| |||||||||| | ||| | || || |||||||||| ||||| Sbjct 13121 CCTTGGCCGACAGGTCCGGGTAATCTT-TGAAATTTCATCTTGATGGGGATAGATCATTG 13179 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| ||| ||||||||||||||| ||||||||||||| ||||||| | |||||||| | Sbjct 13180 -AATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAACTCGCGTTGACT 13238 Query 311 ACGTCCCTGCCCTTTGTA 328 ||| |||||||||||||| Sbjct 13239 ACGCCCCTGCCCTTTGTA 13256 >seq9044 Length=27315 Score = 271 bits (300), Expect = 1e-70 Identities = 217/259 (84%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | || | || | | || |||||||||||||||||| ||| Sbjct 730 GCTTCTTAGAGGGACTATGGCCTTCCAGACCACAAAATTTTGAGGCAATAACAGGTATGT 671 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||||||||||||| ||||||||||||| ||| | ||||||| ||| Sbjct 670 GATGCCCTTAGATGTTCTGGGCAACACGCGCGCTACAGTGATGTATTAAACGAGTCTATC 611 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 |||||||||| ||||| |||||||||| | ||| | ||||| |||||||||| |||| Sbjct 610 ACCTTGGCCGATAGGTCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATT 552 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||| ||||||||||||| | |||||| ||| |||| Sbjct 551 GCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGAAATCAGCTCGCATTGAC 492 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 491 TACGTCCCTGCCCTTTGTA 473 >seq30953 Length=6547 Score = 269 bits (298), Expect = 5e-70 Identities = 255/318 (80%), Gaps = 13/318 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGGGTCGCCG---GCTTC 75 || |||||||| | |||||||| |||| | || || | || ||| | ||||| Sbjct 244 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGCGAT--CGTTCCGCAGTTAGCTTC 301 Query 76 TTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 ||||||||||||| | || | || | | ||||||||||| |||||| ||||||||||||| Sbjct 302 TTAGAGGGACTATGGCCTTCCAGGCCACGGAAGTTTGAGACAATAATAGGTCTGTGATGC 361 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTA----CACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||| |||||||||||||||| |||||| | || ||||| |||| Sbjct 362 CCTTAGATGTTCTAGGCCGCACGCGCGCTATATACACTGATCTATTCACCGAGTCTATCA 421 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||||||| | ||||||||||||||| | ||| | ||||| |||||||||| ||||| Sbjct 422 CCTTGGCCACA-GGTCTGGGTAATCTT-TAAAATTTCATCGTGATGGGGATAGATCATTG 479 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || ||||||| ||||||| |||| |||||||| ||||||||| || ||||| | Sbjct 480 CAATTGATGGTCTTCAAGGAGGAATTCCTAATAAGCGCGAGTCATCAGCTCGTGTTGACT 539 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 540 ACGTCCCTGCCCTTTGTA 557 >seq21734 Length=9722 Score = 264 bits (292), Expect = 2e-68 Identities = 248/310 (80%), Gaps = 8/310 (3%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGGGTCGCCG---GCTTC 75 || |||||||| |||||||||| |||| | || || | || ||| | ||||| Sbjct 2079 GAACGAGACCTCAACCTGCTAACTAGCTATGCGGAGCGAT--CGTTCCGCAGCTAGCTTC 2136 Query 76 TTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||| ||||||||| ||| || | | ||||||||||||||||||||| ||||||| | Sbjct 2137 TTAAAGGGACTATGTCCTCCAGGCCACATAAGTTTGAGGCAATAACAGGTTTGTGATGTC 2196 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 |||| |||||||||||||||||||||||||||||| | |||||||| ||||||||| Sbjct 2197 CTTAAATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATCACCTTG 2256 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 ||| |||| || ||||||| | ||| | ||||| | |||||||| |||||||||| Sbjct 2257 CCCGACAGGTTCGGATAATCTT-TGAAATTTCATCGTGAT-GGGATAGATCATTGCAATT 2314 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||||| |||||||| |||||||| |||||| Sbjct 2315 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGTTCGCGTTGACTACGTC 2374 Query 316 CCTGCCCTTT 325 |||||| ||| Sbjct 2375 CCTGCCTTTT 2384 >seq15876 Length=25779 Score = 260 bits (288), Expect = 3e-67 Identities = 216/260 (83%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCT--CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||| ||| | || |||||| | |||||||||||||||| |||||| || Sbjct 22753 GCTTCTTAGAGGGATTATGGCCTTCCAAGCC-ACGGAAGTTTGAGGCAATTACAGGTTTG 22695 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||||||||||| |||| ||||||||| ||||||||| | ||| |||| || Sbjct 22694 TGATGCCCTTAGATGTTTTGGGTCGCACGCGCACTACACTGATGTATTCAATGAGTCTAT 22635 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||||||||||| | ||| |||||||||| | ||| | || || |||||||||| ||| Sbjct 22634 CACCTTGGCCGACAAGTCCGGGTAATCTT-TGAAATTTCATCATGATGGGGATAGATCAT 22576 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 || |||| ||| ||||||||| ||||| |||||||||||| ||||||| | |||||||| Sbjct 22575 TGTAATTGTTGGTCTTCAACGCGGAATTCCTAGTAAGCGCAAGTCATCAACTCGCGTTGA 22516 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||| Sbjct 22515 CTACATCCCTGCCCTTTGTA 22496 >seq11701 Length=18544 Score = 248 bits (274), Expect = 2e-63 Identities = 213/260 (82%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCT--CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||||| || || ||| | ||||||||||||||||||||| | | Sbjct 14558 GCTTCTTAGAGGGACTATAACCTTCCATGCC-ACGGAAGTTTGAGGCAATAACAGATATT 14500 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||||||||||| |||||||||||| ||||||||||| | ||| |||| || Sbjct 14499 TGATGCCCTTAGATGTTTTGGGCCGCACGCACGCTACACTGATGTATTCAATGAGTCTAT 14440 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||||| | |||| || |||||||| | ||| | ||| |||||||||| ||| Sbjct 14439 CACCTTGGTAGATAGGTGTGAGTAATCTT-TGAAATTTCAAAGTGATGGGGATAGATCAT 14381 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| ||| |||||||| |||||| ||||||||||||| |||||||| || ||||| Sbjct 14380 TGCAATTGTTGGTCTTCAACAAGGAATTCCTAGTAAGCGCGATTCATCAGCTCGTGTTGA 14321 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||||||| ||||||||||| Sbjct 14320 CTACGTCCTTGCCCTTTGTA 14301 >seq3167 Length=41999 Score = 248 bits (274), Expect = 2e-63 Identities = 244/310 (79%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCT-TTGGCGGGTCGCCGGCTTCTT 77 ||||||||||| | |||||||| |||| | || || ||| | | ||||||| Sbjct 7860 GAGCGAGACCTCAGCCTGCTAACTAGCTATGCGGAGCGATTGTTCCGCAACTAGCTTCTT 7801 Query 78 AGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136 | ||||||||| | || | | | | |||| ||| ||||||||||| || |||||||||| Sbjct 7800 AAAGGGACTATGGCCTTCCACGCAACGGAACTTTCAGGCAATAACAAGTTTGTGATGCCC 7741 Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 ||||||||||| ||||||| |||||||||||||| | ||| |||| ||||||||| Sbjct 7740 TTAGATGTTCTAGGCCGCATGCGCGCTACACTGATGTATTCAATGAGTCTATCACCTTGA 7681 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| | |||||||||||||| | ||| | || || ||||||| || |||||||||| Sbjct 7680 CCGACAAGTCTGGGTAATCTT-TGAAATTTCATCATGATGGGGATTGATCATTGCAATTG 7622 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 || |||||||||||||| ||||||||| ||| ||||||||| |||||||| ||||||| Sbjct 7621 TTAGCCTTCAACGAGGAATTCCTAGTAAGTGCGAGTCATCAGCTCGCGTTGACTACGTCC 7562 Query 317 CTGCCCTTTG 326 ||||||||| Sbjct 7561 TTGCCCTTTG 7552 >seq8453 Length=37041 Score = 176 bits (194), Expect = 8e-42 Identities = 180/232 (78%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 94 CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCG 153 |||||| || |||||||||| ||| | || ||| ||||||||||||||||||| ||||| Sbjct 27053 CAAGCC-ATTAAAGTTTGAGGAAATCAAAGATCTTTGATGCCCTTAGATGTTCTAGGCCG 27111 Query 154 CACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA 213 ||| ||| ||||| ||| | |||||||| |||||||| ||| | || ||||| Sbjct 27112 CACACGCCCTACATTGATGTATTCAACGAGTCTATCACCTTTTCCGACACGTACAGGTAA 27171 Query 214 TCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG-------CTCTTCA 266 |||| | ||| | ||||| | ||||||| | |||||||| ||| ||||||| Sbjct 27172 TCTT-TGAAATTTCATCGTGAT-GGGATAGGTCGTTGCAATTGTTGGTCTTCACTCTTCA 27229 Query 267 ACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||| ||||||||||||| || |||||| |||||||| ||| ||||| Sbjct 27230 ACGAGGAATTCCTAGTAAGCGCGAGTTATCAGCTCGCGTTGACTACATCCCT 27281 >seq4587 Length=35126 Score = 131 bits (144), Expect = 3e-28 Identities = 89/100 (89%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| |||||||||| |||||||||| ||| ||||||||||||||| |||| ||| ||| Sbjct 34686 TCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAATAATCGC 34745 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | |||||||| |||||||| ||||||||||||||||||| Sbjct 34746 GAATCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 34785 >seq13709 Length=21787 Score = 125 bits (138), Expect = 1e-26 Identities = 84/94 (89%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 |||||||||| |||||||||| ||| ||||||||||||||| ||||||||||||| |||| Sbjct 16514 TGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCA 16455 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| | |||| ||| |||| |||||||||||||| Sbjct 16454 TCAACTCGCGCTGACTACGCCCCTGCCCTTTGTA 16421 >seq21138 Length=10048 Score = 116 bits (128), Expect = 7e-24 Identities = 82/94 (87%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 |||||||||| |||||||||| ||| ||||||||||||||| ||||||| ||| | |||| Sbjct 5911 TGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTATGCGTGAGTCA 5852 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| | ||| |||| |||||||||||||||||| Sbjct 5851 TCAACTCGCTTTGACAACGTCCCTGCCCTTTGTA 5818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943528709632