Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4197 125 6e-24 seq270 125 6e-24 >seq4197 Length=36674 Score = 125 bits (138), Expect = 6e-24 Identities = 391/599 (65%), Gaps = 10/599 (2%) Strand=Plus/Minus Query 61045 AATCCTCGTCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAA 61103 ||||| ||| ||| |||| |||||| ||| ||||| || ||| ||||| || Sbjct 24015 AATCCGGATCGATTCTGTAT-GTTCCCGATCAAGTATCCTCGCATATGGGAGATGTATAA 23957 Query 61104 AAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGA 61163 ||||| ||||| || |||||||| | |||||||| || | || |||| | | | Sbjct 23956 GAAGGCCGAAGCCTCGTTCTGGACCGCCGAGGAGGTTGACCTCTCACAAGATCTCCGTCA 23897 Query 61164 CTGGGAGCGTT---TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTT 61220 |||||| || | | ||| | || || || ||||| | || ||||| Sbjct 23896 TTGGGAGGAAACCCTAACTTCTGATGAGAAGCACTTTATCTCTCATGTCCTCGCCTTCTT 23837 Query 61221 TGCCGCTTCGGACGGTATCGTCAATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGC 61279 || || || ||||| ||||| |||||| | ||| | ||| | | ||||| | | Sbjct 23836 CGCAGCCTCCGACGGGATCGTGCTCGAGAATCTCGCTGGGAGGTT-CATGAAGGAGATCC 23778 Query 61280 AAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGG 61339 | || || ||||| || ||||||||||||||||| || || |||||| ||||||| | Sbjct 23777 AGGTTTCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCAATCGAGAATATCCACTCTG 23718 Query 61340 AGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGT 61399 | |||||||| |||| |||| || || | || | | || | || | | Sbjct 23717 AAATGTACAGCCTTCTTCTCGAAACCCTGATTCGAGACTCGTCCGAGAAGCACCGGCTCT 23658 Query 61400 TCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGA 61459 || | |||||||| || | || || || | |||||| || ||||| || |||| Sbjct 23657 TCCACGCCATCGATACTGTTCCCGCTGTCACCAAGAAAGCCGACTGGGCGCTCCGCTGGA 23598 Query 61460 TCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTG 61519 | | | | | | || | ||| || | | || ||||| || || ||| Sbjct 23597 T---TGATTCCGCAGAATCCTTCGCTGAGCGCATAGTTGCTTTTGCCTGCGTTGAAGGTA 23541 Query 61520 TATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCG 61579 | || ||| |||| || ||| || |||||| | || || || ||||| ||||| | Sbjct 23540 TCTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGCTAAAAAAGCGAGGACTGATGCCTG 23481 Query 61580 GTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCT 61638 | || |||||| || |||||||| || |||||||| ||| |||| || ||||| ||| Sbjct 23480 GACTAACCTTCTCGAACGAGTTGATCTCCCGCGACGAAGGCTTGCACTGCGATTTCGCT 23422 >seq270 Length=105985 Score = 125 bits (138), Expect = 6e-24 Identities = 540/843 (64%), Gaps = 17/843 (2%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | |||||||||||| | | |||| Sbjct 92336 ATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAGGTCGATCTAACTCAAGAT 92277 Query 61156 ATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212 || | |||||||| | || | | || || |||||||||| || || | Sbjct 92276 ATCCGTCACTGGGAGGAAACTCTAACCACCGACGAGAAACATTTCATCTCTCACGTCCTC 92217 Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| ||||| || ||||| ||||| ||||| | | | | ||| | | Sbjct 92216 GCCTTCTTCGCCGCCTCCGACGGAATCGTTCTCGAGAACCTCGCCGGAAGGTTCATGAAT 92157 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 || | || || || ||||| || ||||| || |||||||| || | ||||| || Sbjct 92156 GATATCCAGGTCTCCGAGGCTCGCGCCTTCTATGGTTTCCAGATCGCAGTTGAGAACATC 92097 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACG-TACATCAGGGAGCGGGCGGAACGTGA 61391 || || ||||||||||| | ||||| | ||| || || || | | || | | | Sbjct 92096 CATTCTGAGATGTACAGCCTCCTCATTCAAACGCTAATTCGGGACTCCGACGAGAAG-CA 92038 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451 || | ||| | || || || || || || || || | ||| ||| | |||||||| Sbjct 92037 CCGCCTCTTCCACGCAATTGACACCATCCCTGCCGTCACAAAGAAGGCGCAGTGGGCCTT 91978 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 ||||| | | | | || | | || | || ||| | | || || || || Sbjct 91977 GCGATGGAT--CGATTCCTCCGAAT-CCTTCGCCGAGCGAATCGTCGCTTTCGCTTGCGT 91921 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 || || | || ||| ||| || ||| | || ||| | || ||||| || || Sbjct 91920 GGAAGGCATCTTCTTCTCCGGAAGCTTCTGCGCCGTATTCTGGCTAAAAAAACGCGGTCT 91861 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| || |||||||| ||| ||| | ||||| | ||||| ||| | || ||||| Sbjct 91860 GATGCCAGGATTGACCTTCTCCAACGAGCTTATATCCAGAGACGAAGGCTTACACTGTGA 91801 Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691 ||||||| |||| | | | || | ||| ||| | | || || || || Sbjct 91800 TTTTGCTTGTTTGATCTACGAAATC---CTGAAGAAGAAGCTTCCTGAAGACCGAGTAAA 91744 Query 61692 TGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGT 61751 | ||| || | || ||||| ||||| |||| ||| | |||||| |||| Sbjct 91743 AGGGATCGTGAGAGATGCGGTGGAGATCGAGAAGGAGTTTATTTGTGACGCGCTGCCATG 91684 Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811 | | | || || |||||| | ||| ||| |||| ||||| ||||| || || | Sbjct 91683 CGCGTTGATTGGGATGAATGGAAAACTGATGAGTGAGTACATTGAGTTTGTAGCTGATAG 91624 Query 61812 TCTGTTGGT--CGATTTGG-GTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTT 61868 |||||||| || || || || |||| | | | ||| ||||| ||||||| Sbjct 91623 GCTGTTGGTTGCGCTTGGGTGTGGGAAGGTGTACGGT-GTAC--CCAACCCGTTTGATTG 91567 Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| | || || | | || ||||| ||||| || ||||| | || |||||||| Sbjct 91566 GATGGATCTTATCTCATTACAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGCGACTA 91507 Query 61929 TCA 61931 || Sbjct 91506 CCA 91504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395689967536160