Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 125 6e-24
seq270 125 6e-24
>seq4197
Length=36674
Score = 125 bits (138), Expect = 6e-24
Identities = 391/599 (65%), Gaps = 10/599 (2%)
Strand=Plus/Minus
Query 61045 AATCCTCGTCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAA 61103
||||| ||| ||| |||| |||||| ||| ||||| || ||| ||||| ||
Sbjct 24015 AATCCGGATCGATTCTGTAT-GTTCCCGATCAAGTATCCTCGCATATGGGAGATGTATAA 23957
Query 61104 AAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGA 61163
||||| ||||| || |||||||| | |||||||| || | || |||| | | |
Sbjct 23956 GAAGGCCGAAGCCTCGTTCTGGACCGCCGAGGAGGTTGACCTCTCACAAGATCTCCGTCA 23897
Query 61164 CTGGGAGCGTT---TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTT 61220
|||||| || | | ||| | || || || ||||| | || |||||
Sbjct 23896 TTGGGAGGAAACCCTAACTTCTGATGAGAAGCACTTTATCTCTCATGTCCTCGCCTTCTT 23837
Query 61221 TGCCGCTTCGGACGGTATCGTCAATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGC 61279
|| || || ||||| ||||| |||||| | ||| | ||| | | ||||| | |
Sbjct 23836 CGCAGCCTCCGACGGGATCGTGCTCGAGAATCTCGCTGGGAGGTT-CATGAAGGAGATCC 23778
Query 61280 AAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGG 61339
| || || ||||| || ||||||||||||||||| || || |||||| ||||||| |
Sbjct 23777 AGGTTTCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCAATCGAGAATATCCACTCTG 23718
Query 61340 AGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGT 61399
| |||||||| |||| |||| || || | || | | || | || | |
Sbjct 23717 AAATGTACAGCCTTCTTCTCGAAACCCTGATTCGAGACTCGTCCGAGAAGCACCGGCTCT 23658
Query 61400 TCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGA 61459
|| | |||||||| || | || || || | |||||| || ||||| || ||||
Sbjct 23657 TCCACGCCATCGATACTGTTCCCGCTGTCACCAAGAAAGCCGACTGGGCGCTCCGCTGGA 23598
Query 61460 TCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTG 61519
| | | | | | || | ||| || | | || ||||| || || |||
Sbjct 23597 T---TGATTCCGCAGAATCCTTCGCTGAGCGCATAGTTGCTTTTGCCTGCGTTGAAGGTA 23541
Query 61520 TATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCG 61579
| || ||| |||| || ||| || |||||| | || || || ||||| ||||| |
Sbjct 23540 TCTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGCTAAAAAAGCGAGGACTGATGCCTG 23481
Query 61580 GTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCT 61638
| || |||||| || |||||||| || |||||||| ||| |||| || ||||| |||
Sbjct 23480 GACTAACCTTCTCGAACGAGTTGATCTCCCGCGACGAAGGCTTGCACTGCGATTTCGCT 23422
>seq270
Length=105985
Score = 125 bits (138), Expect = 6e-24
Identities = 540/843 (64%), Gaps = 17/843 (2%)
Strand=Plus/Minus
Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155
|||||||| || || ||||| ||||||||||| | |||||||||||| | | ||||
Sbjct 92336 ATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAGGTCGATCTAACTCAAGAT 92277
Query 61156 ATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212
|| | |||||||| | || | | || || |||||||||| || || |
Sbjct 92276 ATCCGTCACTGGGAGGAAACTCTAACCACCGACGAGAAACATTTCATCTCTCACGTCCTC 92217
Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272
|| ||||| ||||| || ||||| ||||| ||||| | | | | ||| | |
Sbjct 92216 GCCTTCTTCGCCGCCTCCGACGGAATCGTTCTCGAGAACCTCGCCGGAAGGTTCATGAAT 92157
Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332
|| | || || || ||||| || ||||| || |||||||| || | ||||| ||
Sbjct 92156 GATATCCAGGTCTCCGAGGCTCGCGCCTTCTATGGTTTCCAGATCGCAGTTGAGAACATC 92097
Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACG-TACATCAGGGAGCGGGCGGAACGTGA 61391
|| || ||||||||||| | ||||| | ||| || || || | | || | | |
Sbjct 92096 CATTCTGAGATGTACAGCCTCCTCATTCAAACGCTAATTCGGGACTCCGACGAGAAG-CA 92038
Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451
|| | ||| | || || || || || || || || | ||| ||| | ||||||||
Sbjct 92037 CCGCCTCTTCCACGCAATTGACACCATCCCTGCCGTCACAAAGAAGGCGCAGTGGGCCTT 91978
Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511
||||| | | | | || | | || | || ||| | | || || || ||
Sbjct 91977 GCGATGGAT--CGATTCCTCCGAAT-CCTTCGCCGAGCGAATCGTCGCTTTCGCTTGCGT 91921
Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571
|| || | || ||| ||| || ||| | || ||| | || ||||| || ||
Sbjct 91920 GGAAGGCATCTTCTTCTCCGGAAGCTTCTGCGCCGTATTCTGGCTAAAAAAACGCGGTCT 91861
Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631
||||| || |||||||| ||| ||| | ||||| | ||||| ||| | || |||||
Sbjct 91860 GATGCCAGGATTGACCTTCTCCAACGAGCTTATATCCAGAGACGAAGGCTTACACTGTGA 91801
Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691
||||||| |||| | | | || | ||| ||| | | || || || ||
Sbjct 91800 TTTTGCTTGTTTGATCTACGAAATC---CTGAAGAAGAAGCTTCCTGAAGACCGAGTAAA 91744
Query 61692 TGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGT 61751
| ||| || | || ||||| ||||| |||| ||| | |||||| ||||
Sbjct 91743 AGGGATCGTGAGAGATGCGGTGGAGATCGAGAAGGAGTTTATTTGTGACGCGCTGCCATG 91684
Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811
| | | || || |||||| | ||| ||| |||| ||||| ||||| || || |
Sbjct 91683 CGCGTTGATTGGGATGAATGGAAAACTGATGAGTGAGTACATTGAGTTTGTAGCTGATAG 91624
Query 61812 TCTGTTGGT--CGATTTGG-GTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTT 61868
|||||||| || || || || |||| | | | ||| ||||| |||||||
Sbjct 91623 GCTGTTGGTTGCGCTTGGGTGTGGGAAGGTGTACGGT-GTAC--CCAACCCGTTTGATTG 91567
Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928
||||| | || || | | || ||||| ||||| || ||||| | || ||||||||
Sbjct 91566 GATGGATCTTATCTCATTACAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGCGACTA 91507
Query 61929 TCA 61931
||
Sbjct 91506 CCA 91504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395689967536160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |