Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq5412 383 2e-101 seq8546 246 3e-60 seq25216 197 2e-45 seq59 188 8e-43 seq29420 181 1e-40 seq3927 131 2e-25 seq8630 111 2e-19 seq13559 87.8 2e-12 seq4835 82.4 8e-11 >seq5412 Length=31808 Score = 383 bits (424), Expect = 2e-101 Identities = 502/693 (72%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 159849 GGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCC 159907 |||| ||||| ||||||| || || | ||| | ||||| ||| | || || | ||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 159908 TTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTC 159967 ||||| |||||||| || || || || ||||| || |||||||| || ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 159968 ATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTT 160027 | ||||| ||||| || ||||||||||| || ||| ||| || || ||| | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 160028 CACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCT 160087 ||||| ||||| || |||||||| ||||| | || || ||| | || || |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 160088 TTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGG 160147 | | || | || || |||||| | | || | | || ||||||||||||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 160148 GAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTC 160207 ||||| || |||||| |||||||| || ||||| |||||| || || || || || Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 160208 GCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCT 160267 || ||||| ||||||| ||| | ||||||| | ||| | || || || ||| | Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 160268 ATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAAT 160327 |||||||| || || ||||||||||| |||| ||| |||||||||| || || ||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 160328 ATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTC 160387 ||||||||||| || || |||||| | || || ||||| ||||||| || | || ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 160388 TCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAG 160447 | |||||| ||| |||| || || ||| | |||| || || ||||||| ||| Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 160448 TCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCA 160507 || || | ||||||| | | |||||||||||||||||||| || ||||| || || Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 160508 CATGGCTACTTCGGTCGTTTGATCTTCCAATAT 160540 ||||| || || || || || |||||||||||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 160653 TCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACG 160712 |||| |||||||| || | | || | ||||| | || | || |||||||| || Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 160713 TGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCC 160772 | |||||||| || || || |||||||| ||||| || ||||| |||| ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 160773 CTCTCGACCTTGCTGC 160788 |||||||||| || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 246 bits (272), Expect = 3e-60 Identities = 321/444 (72%), Gaps = 4/444 (1%) Strand=Plus/Minus Query 160346 CACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCT 160405 |||||| | || || ||||| |||||||| || || | ||| || ||||||||| ||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 160406 CTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGGTTAC 160465 |||| || |||||| | |||| || || ||||||| | | ||| || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 160466 AAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGGTCGT 160525 | || ||||||||||| || ||| | || || || || || ||||| || || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 160526 TTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCT 160585 || |||||||||||||| || ||| | || | ||| | || |||||| | | |||| Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 160586 TGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTC 160645 |||||||| || || || ||||| ||| | | ||| || ||| |||||||| | || Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 160646 AATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGG 160705 || || ||||| |||||||| || | | || | ||||| | || || |||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTGG 12849 Query 160706 GCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCAC 160765 || || | ||||||||||| || || |||||||| ||||| || ||||| ||||| Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789 Query 160766 AACTTCCCTCTCGACCTTGCTGCT 160789 ||||||| ||| ||||| |||||| Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765 >seq25216 Length=8180 Score = 197 bits (218), Expect = 2e-45 Identities = 215/284 (76%), Gaps = 1/284 (0%) Strand=Plus/Minus Query 160166 GGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTA 160225 |||||||| || ||||| | |||| || || ||||| || || |||||| ||||||| Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194 Query 160226 TTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCT 160285 ||| | ||||||| | ||||| || || || |||| ||||||||| || || ||| Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134 Query 160286 GGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTC 160345 |||||||| |||| ||| |||||||||| | || ||||| ||||||||||| || || Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074 Query 160346 CACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCT 160405 |||||| | || || | ||| |||||||| || || || ||| |||||||||||| ||| Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014 Query 160406 CTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTC 160449 |||| || || ||| | |||| || || ||| ||| ||| || Sbjct 7013 TTGGTAACCTCGAGTTTGATCAG-GAAACCACATAAAATGAATC 6971 >seq59 Length=339703 Score = 188 bits (208), Expect = 8e-43 Identities = 196/257 (76%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 160256 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAA 160315 || || |||| ||||||||| || | ||||||||||| |||| ||| |||||||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 160316 GCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGT 160375 || || ||||| ||||||||||| || || |||||| | | || ||||| |||||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 160376 GGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACG 160435 || || || ||| || ||||||||| ||| |||| || || ||| | | || || || Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 160436 ACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAAC 160495 ||||||| ||| || || | ||||||| ||| |||||||||||||||||||| || Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 160496 ATCGTCGCAGCACATGG 160512 || || || | ||||| Sbjct 52549 ATTGTAGCTACTCATGG 52565 >seq29420 Length=7120 Score = 181 bits (200), Expect = 1e-40 Identities = 256/360 (71%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 159916 TGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGG 159975 |||||| || || || || ||||| || |||||||| || |||| || || | |||| Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 159976 TAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTA 160035 ||||| || |||||||||| || |||| |||| || || ||| | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 160036 TCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACT 160095 ||| || |||||||| ||||| | || || ||| | || || |||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 160096 CGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTC 160155 || || |||||| | | || | | || |||||||||||||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 160156 TTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGC 160215 || |||||| |||||||| || ||||| |||||| || || | ||| || || ||||| Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 160216 TTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCT 160275 | || || | ||| | ||||||| | ||||| || || || |||| ||||||||| Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq3927 Length=49767 Score = 131 bits (144), Expect = 2e-25 Identities = 179/246 (73%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 161803 TGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTT 161862 |||| |||||| || ||||| || ||||| | || || || || ||| | ||||| ||| Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066 Query 161863 GAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTAT 161921 ||||||||||| ||| || | | || ||||| ||||| || || || | |||||| || Sbjct 26067 GAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125 Query 161922 TGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGC 161981 ||| ||||||| || ||||| || ||||| || || ||||| |||||||| || Sbjct 26126 TGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 26185 Query 161982 GCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAA 162041 ||| ||||| || || |||| ||| | ||| | || || | ||||| || || || Sbjct 26186 GCCTAGTTTTGGTGTAGCATCTATATTC-GATTCATCCTCTTTTTTCAAGGGTTTCATAA 26244 Query 162042 TTGGAC 162047 |||||| Sbjct 26245 TTGGAC 26250 >seq8630 Length=23577 Score = 111 bits (122), Expect = 2e-19 Identities = 131/176 (74%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 160417 TAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCA 160476 |||| | |||| || | ||| ||| ||| ||| || | |||||||| || ||||| Sbjct 7454 TAGTTTGATCAGGGAACCCACATAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCA 7513 Query 160477 AGAGGAAGAGACTTACAACATCGT-CGCAGCACATGGCTACTTCGGTCGTTTGATCTTCC 160535 |||||| || ||||| || ||||| ||| || ||||| || || ||||| || ||||||| Sbjct 7514 AGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTTTGGTCGATTCATCTTCC 7573 Query 160536 AATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCT 160591 ||||||| || ||||| || || ||| | || ||||| | || ||||||||| Sbjct 7574 AATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATTAGCCGCTTGGCCT 7629 >seq13559 Length=16232 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 160376 GGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACG 160435 || || || ||| |||||||||||| ||| |||| || ||||| | |||| || || Sbjct 5671 GGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGCTTGATCAGGGAAACC 5612 Query 160436 ACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAAC 160495 | ||||| ||| | || | |||||||| || ||||||||||| | ||||| || Sbjct 5611 ATAGAAAATGAATATGCTAATGAAGGTTACAAATTTGGTCAAGAGGAGAAAACTTAGAAT 5552 Query 160496 ATCGTCGCAGCACATGGCTACTTCGGTC 160523 ||||| || || ||||| || |||| || Sbjct 5551 ATCGTAGCTGCTCATGGTTATTTCGATC 5524 >seq4835 Length=43218 Score = 82.4 bits (90), Expect = 8e-11 Identities = 100/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 160460 GGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTC 160519 ||||||| || ||||||||||| || ||||| || ||||| || || ||||| || || Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 160520 GGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCT----CTGCACTTCTT 160575 || | || |||||||||||||| || ||||| || || ||| | || ||||| Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Query 160576 CCTCGCTGCTTGGCCT 160591 | || ||||||||| Sbjct 9179 ATTAGCCGCTTGGCCT 9194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548704624633200