Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq5412 307 1e-78 seq8546 239 6e-58 seq29420 154 2e-32 seq25216 154 2e-32 seq59 147 3e-30 seq8630 104 3e-17 seq4835 89.7 6e-13 >seq5412 Length=31808 Score = 307 bits (340), Expect = 1e-78 Identities = 491/697 (70%), Gaps = 16/697 (2%) Strand=Plus/Minus Query 188897 GGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAACCATCTGC-TTCATCGTCGC 188954 |||| || || ||||||| ||||| ||| | | | ||||| ||| | || || | || Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTAC-CTTATTGACCGCAAC-ATCCGTATTTATTATAGC 15226 Query 188955 CTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACT 189014 ||| | ||||| || || ||||| |||||||| || || ||||| || ||| || || Sbjct 15225 CTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCT 15166 Query 189015 CATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCT 189074 | || |||||||| || ||||||||||| || | | | | || || ||| | Sbjct 15165 TCTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTT 15106 Query 189075 TCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCC 189134 ||||| || || || |||||||| || || | ||||| ||| | ||||| |||||||| Sbjct 15105 GCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCC 15046 Query 189135 TTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGA 189191 | | || | || || |||||| | | || | || || | ||||||||||||| Sbjct 15045 ATATGAGCTAATTGTTTTTCACTTCTTACTTGG--TGTA-GCTTGTTACATGGGTCGTGA 14989 Query 189192 GTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACC 189251 ||||||||| || |||||| |||||||| |||||||| |||| || || || || Sbjct 14988 GTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCC 14929 Query 189252 TGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGA 189311 |||||| | || | || || || || |||| || ||||| |||| || ||| | Sbjct 14928 TGTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAA 14869 Query 189312 CGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCA 189371 | ||||| | || || ||| || ||||||| |||| |||| ||||| || ||||| Sbjct 14868 TGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 14809 Query 189372 CAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACT 189431 ||||||||| |||||||| || |||||| | || || || ||||| |||| || | || Sbjct 14808 CAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCT 14749 Query 189432 GTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAAC 189491 ||| | ||||||||| | || ||||| || | | |||||||| |||| Sbjct 14748 ATTC------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAA 14695 Query 189492 CGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGC 189551 || || || | ||||||| | |||| ||||| ||||| || || || ||||| || Sbjct 14694 TGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGC 14635 Query 189552 TGCTCATGGATATTTCGGTCGTCTTATCTTCCAATAT 189588 ||||||||| ||||| || || | |||||||||||| Sbjct 14634 TGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 189701 TCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACG 189760 |||| ||||| ||||| | ||||| ||||||||||||| | || || ||||| || Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 189761 TTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCC 189820 || | ||||| || |||||||||||||| |||||||| ||||| |||| ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 189821 CTCTTGATCTGGCAGCA 189837 |||| || || |||||| Sbjct 14476 CTCTCGACCTAGCAGCA 14460 >seq8546 Length=31398 Score = 239 bits (264), Expect = 6e-58 Identities = 319/443 (72%), Gaps = 4/443 (1%) Strand=Plus/Minus Query 189394 CACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCA 189453 |||||| | || || || ||||| ||||| || || | ||| | ||||||||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 189454 CTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTAC 189513 | || |||||| || | | |||||||| |||| | ||| || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 189514 AAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGT 189573 | ||||| ||||| || ||||| | || || || ||||||||||| ||||| || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 189574 CTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCC 189633 | |||||||||||||| |||||| | || | ||| | || |||||| | | ||| Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 189634 TGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTC 189693 ||||| || || ||||| |||||||| | | || | || || |||||||| | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 189694 AATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGG 189753 || || ||||| ||||| ||||| | ||||| ||||||||||||| || ||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTGG 12849 Query 189754 GCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCAC 189813 || || || | ||||| ||| |||||||||||||| |||||||| ||||| ||||| Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789 Query 189814 AACTTCCCTCTTGATCTGGCAGC 189836 ||||||| ||| || || || || Sbjct 12788 AACTTCCATCTAGACCTAGCTGC 12766 >seq29420 Length=7120 Score = 154 bits (170), Expect = 2e-32 Identities = 254/361 (70%), Gaps = 8/361 (2%) Strand=Plus/Plus Query 188964 TGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGG 189023 ||| || || ||||| |||||||| || || ||||| || |||| || || | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 189024 AAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTA 189083 |||||| || |||||||||| || | || | || || || ||| | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 189084 CCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACT 189143 || || |||||||| || || | ||||| ||| | ||||| |||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 189144 GGTAGTCTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAGTGGGAACT 189200 || || |||||| | | || | || || | |||||||||||||||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGG--TGTA-GCTTGTTACATGGGTCGTGAGTGGGAACT 3651 Query 189201 CTCTTACCGTCTCGGTATGCGTCCTTGGATCTGC-ATTGCTTACTCTGCACCTGTTGCAG 189259 || |||||| |||||||| |||||||| ||| |||| || || | |||||||| | Sbjct 3652 TAGTTTCCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCGTATTCAGTTCCTGTTGCGG 3710 Query 189260 CAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGC 189319 | || | | | || || |||| || |||||||||| || ||||| | |||| Sbjct 3711 CTGCTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGC 3770 Query 189320 C 189320 | Sbjct 3771 C 3771 >seq25216 Length=8180 Score = 154 bits (170), Expect = 2e-32 Identities = 187/252 (74%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 189214 GGTATGCGTCCTTGGATCTGC-ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGT 189272 |||||||| |||||||| ||| ||||| || || || |||||||| || || | || || Sbjct 7253 GGTATGCGCCCTTGGAT-TGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGT 7195 Query 189273 CTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAG 189332 || || |||| || |||||||||| || ||||| | ||||| | || || Sbjct 7194 TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTC 7135 Query 189333 TGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 189392 ||| || ||||||| |||| |||| ||||| | |||||||||||||| |||||||| || Sbjct 7134 TGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATT 7075 Query 189393 CCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTC 189452 |||||| | || || | ||||| ||||| || || || ||| || ||||||||||| Sbjct 7074 TCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC 7015 Query 189453 ACTCGTTACCTC 189464 | || ||||| Sbjct 7014 TTTGGTAACCTC 7003 >seq59 Length=339703 Score = 147 bits (162), Expect = 3e-30 Identities = 196/268 (73%), Gaps = 7/268 (3%) Strand=Plus/Plus Query 189304 TTCTCTGACGCAATGCC-CTTGG-GTATCAGTGGAACCTTCAACTACATGCTTGTCTTCC 189361 || ||||| | ||||| || || || || ||| || ||||||| |||| |||| |||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTC--TGGTACTTTCAACTTCATGATTGTATTCC 52366 Query 189362 AAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCG 189421 | || |||||||||||||| |||||||| || |||||| | | || || ||||| |||| Sbjct 52367 ATGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCG 52426 Query 189422 GTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAA 189481 | || || || ||| | ||||||||||| | || ||||| || || | |||| Sbjct 52427 GCGGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAA 52486 Query 189482 CCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACA 189541 |||| |||| || || || | ||||||| |||||| ||||| ||||| || || | Sbjct 52487 CCACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATA 52546 Query 189542 ACATCGTTGCTGCTCATGGATATTTCGG 189569 | || || ||| ||||||| |||||| Sbjct 52547 ATATTGTAGCTACTCATGG---TTTCGG 52571 >seq8630 Length=23577 Score = 104 bits (114), Expect = 3e-17 Identities = 103/132 (78%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 189508 GGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTT-GCTGCTCATGGATATTT 189566 |||||||| ||||| ||||| || ||||| || || ||||| ||||||||||| ||||| Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 189567 CGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCT 189626 ||||| | |||||||||||||| |||||||| || ||||| | || ||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 189627 CGCTGCCTGGCC 189638 || || ||||| Sbjct 7617 AGCCGCTTGGCC 7628 >seq4835 Length=43218 Score = 89.7 bits (98), Expect = 6e-13 Identities = 101/135 (75%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 189508 GGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTC 189567 ||||||| ||||| ||||| || ||||| || || ||||| ||||||||||| ||||| Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 189568 GGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTC----ACTTCACTTCTT 189623 || | | |||||||||||||| |||||||| || ||||| | | || ||||| Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Query 189624 CCTCGCTGCCTGGCC 189638 | || || ||||| Sbjct 9179 ATTAGCCGCTTGGCC 9193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631007929956000