Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq871 194 7e-47 seq286 111 7e-22 seq594 84.2 9e-14 >seq871 Length=75021 Score = 194 bits (214), Expect = 7e-47 Identities = 214/281 (76%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 407 GCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGT--TTGGGTGTCAA 464 |||||||||| |||||| || ||||||||| |||| | ||||||| ||| || ||| Sbjct 32267 GCCCGTCTTGAAACACGAACTAAGGAGTCTGACATGTGTGCGAGTCAACTTGATTG-CAA 32325 Query 465 ACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTG--AGGGTGCACCATCGAC 522 ||| | | || ||||| || | |||||| ||| | ||| ||||||| |||| Sbjct 32326 ACCTATAAGGCAAAAAAAAGTTGACTG--GTGGGATCCCCTAGTAGGTTGCACCACCGAC 32383 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 | | | |||| | | || || || |||| ||||||| |||| | ||||||||||||| Sbjct 32384 CAACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCATGCCTGTCGAGACCCGAAAGATG 32443 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 |||||||||||||||| || ||||||||||||||||||| |||||| ||||| | | Sbjct 32444 GTGAACTATGCCTGAACGAGGCAAAGCCAGAGGAAACTCTGGCGGAGGCCCGCAGTGATA 32503 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||||||| ||||| | || ||||||||||||| Sbjct 32504 TTGACGTGCAAATCGTTCGTCTGACTTAGGTATAGGGGCGA 32544 Score = 100 bits (110), Expect = 1e-18 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 77 GTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATC 136 ||||||| | || || |||||||| | ||||||||||||| ||||||| |||| Sbjct 31922 GTAAATTCCGTCCAAGGCTAAATACCAGTGAGAGACCGATAGCAAACAAGTACCGTGAGA 31981 Query 137 GAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||||||||||||| |||||| ||||||||| ||| | | ||||||||| |||||| Sbjct 31982 GAAAGATGAAAAGGACTTTGAAAAGAGAGTAAAAGATTGCTTGAAATTGTCAGGAGGGAA 32041 Query 197 GCG 199 ||| Sbjct 32042 GCG 32044 >seq286 Length=200442 Score = 111 bits (122), Expect = 7e-22 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 49 TGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAG 108 ||||||||||| ||| | || ||| |||||||| ||||| |||||||| |||| || Sbjct 190178 TGTTTGGGAATACAGGCCCAATCGGGCGGTAAATTCTGTCTAAGGCTAAATACTGGCGAG 190237 Query 109 AGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTA 168 || |||| ||| ||||||| | || || |||||||||| |||||| ||||||||| | Sbjct 190238 AGCCCGACAGCAAACAAGTATCGCGAGGGACAGATGAAAAGGACTTTGAAAAGAGAGTCA 190297 Query 169 AAAAGCACGTGAAATTGTTGAAAGGGAAG 197 || | ||||||||| || | ||||| Sbjct 190298 TGTAGTGCTTGAAATTGTAGAGAAGGAAG 190326 >seq594 Length=113620 Score = 84.2 bits (92), Expect = 9e-14 Identities = 182/268 (68%), Gaps = 17/268 (6%) Strand=Plus/Plus Query 406 GGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT-CAA 464 |||| |||| | ||||| || | |||||| | |||| | ||||||| |||||| ||| Sbjct 57715 GGCCTGTCTAGAAACACAGATCGAGGAGTTTGACATGTGTGCGAGTCAACGGGTGTGCAA 57774 Query 465 ACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG--TGCACCATCGA 521 || | | | || || || | | || | ||| || | | || ||| || | Sbjct 57775 ACTCATAAGGCGAAAGGATTGCATATTGACG--GGATTCCCTCACGGGTTGCGCCGCTAA 57832 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 |||||| |||| | || || || || ||| ||||||| | |||| |||| |||||| Sbjct 57833 CCGATCTTGATCTTTTGAGAAGGGTTCGAGAGAGAGCATGCTTATTGGAACCCAAAAGAT 57892 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 |||||||||||||| ||| |||| |||| |||| || |||| |||| | Sbjct 57893 GGTGAACTATGCCT----------AAG-CAGATGAAATTCTGATGTAGGCCCGCAATAAT 57941 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTT 669 | ||||||||||||||||| |||| Sbjct 57942 ATTAACGTGCAAATCGATCGTCTGATTT 57969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079399507250