Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq22943 107 3e-21 seq13 82.4 1e-13 seq1093 78.8 1e-12 >seq22943 Length=608 Score = 107 bits (118), Expect = 3e-21 Identities = 170/243 (70%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| || || ||||| ||||| | |||||| || ||||| ||| ||| | || Sbjct 528 CCTTCCAGCATCGAGCAGGTGTCAGACTCTATACACCGTGTTACCA-CTTAGCAGAGTCC 470 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||| || | | || | | ||| || | || || | Sbjct 469 TGTGTTTTTAATAAACAGTAACTACACCCTGGTATGTGCCACTTTCCTAAGAAAAAGAT- 411 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || || | ||||||||||||| ||||||| ||| ||||||||||| ||||| Sbjct 410 ---------AGGAGAG-CACCCCTTCTCCCAAAGTTACAGGGTCATTTTGCCGAGTTCCT 361 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | ||| |||||| |||||| || ||||||| ||||||| | Sbjct 360 TCGACATGGTTCTCTCAAGTGCCCTAGTATACTCTACTTGTTCACCTGTTTCGGTTTGGG 301 Query 246 GTA 248 ||| Sbjct 300 GTA 298 >seq13 Length=895479 Score = 82.4 bits (90), Expect = 1e-13 Identities = 78/100 (78%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202 ||||||||||||| |||||||||| ||||||||||| ||| || |||| | | Sbjct 807567 CACCCCTTCTCCCAAAGTTACGGG-----TTTGCCGAATTTCTTCGACATGGTTCTCTCA 807513 Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | || | |||||| |||||| || ||||||||||||||| Sbjct 807512 AGCGACCTAGTATACTCTACTTGTTCACCTGTGTCGGTTT 807473 >seq1093 Length=54982 Score = 78.8 bits (86), Expect = 1e-12 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||| |||||||||| | ||||||| || ||||||| | |||| | | Sbjct 28461 GCACCCCTTCTCTCGAAGTTACGAGATTATTTTGCTGAGTTCCTTAGAGAGAGTTGTCTC 28402 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | | ||| |||||||||||||| |||| ||||| |||| Sbjct 28401 GCGCTCCTAAGTATTCTCTACCTACCCACACGTGTCAGTTT 28361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694211677635