Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq102 145 2e-32 seq6837 138 3e-30 seq1093 113 1e-22 seq782 98.7 3e-18 seq838 93.3 1e-16 seq1191 75.2 3e-11 seq258 75.2 3e-11 >seq102 Length=349948 Score = 145 bits (160), Expect = 2e-32 Identities = 109/128 (85%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 14 CATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTA 73 ||||||||||| || | ||||||||||| ||| ||||||| ||| ||||||| Sbjct 210245 CATCTTCACAGACATGTGTATTTCACTGAGCCTCTCTCTGAGACAGTGCCCAGATCGTTA 210304 Query 74 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 133 |||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 210305 CGCCTTTAGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCAACCTTAGGACCGTTAT 210364 Query 134 TGTTACGG 141 ||||||| Sbjct 210365 AGTTACGG 210372 >seq6837 Length=1256 Score = 138 bits (152), Expect = 3e-30 Identities = 123/154 (80%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||| |||| || || ||||||||||| ||| |||||| ||| ||||| Sbjct 182 GCATCTTTACAGATATGTCTATTTCACTGAGCCTCTCTCCAAGACAGTGCCCAGGTCGTT 123 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || || | ||||| |||||||||||| ||||||||||||||||||||| | ||||||||| Sbjct 122 ACACCTTCCGTGCGGGTCGGAACTTATCCGACAAGGAATTTCGCTACCATTGGACCGTTA 63 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCA 166 | |||| |||| | ||| || ||||||||| ||| Sbjct 62 TAGTTATGGCCACTGTTCACTGGGGCTTCGGTCA 29 >seq1093 Length=54982 Score = 113 bits (124), Expect = 1e-22 Identities = 242/364 (66%), Gaps = 27/364 (7%) Strand=Plus/Minus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 || |||||||| |||||| | |||||||||||||||||||||||||| | ||| ||||| Sbjct 28713 ATTGTTACGCCTTTCGTGTGGATCGGAACTTACCCGACAAGGAATTTCTCGACCATAGGA 28654 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGC 182 || |||| |||||||||||| || || |||||| | ||| | | |||| Sbjct 28653 CCATTATAGTTACGGCCGCCATTCACTAAGGCTTCAGTTGCTGGCTCCCCTGTCATTAGG 28594 Query 183 TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC 242 | ||| | || ||||| |||||| || ||||| | | ||| |||| | ||| Sbjct 28593 TCACCAACTTCCTTGACCTTTCGGCACTGGACAGGCATTAACCCCCATACATGGTCTTAT 28534 Query 243 GTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGG 302 | ||||| ||| ||||||||| |||||| || | |||| || || || || Sbjct 28533 GACTTTGCGGAGACTTGTGTTTTTGGTAAACAATCACTCGAGCCTAGTCACTACGTCC-- 28476 Query 303 CATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGT 362 ||| ||| ||| |||| ||||||| |||||||||| Sbjct 28475 ----CCCTTTGTGAGGAAG-----CACC------------CCTTCTCTCGAAGTTACGAG 28437 Query 363 GCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAA 422 |||||| |||||||| ||||| |||| || ||| |||||||||||| | Sbjct 28436 ATTATTTTGCTGAGTTCCTTAGAGAGAGTTGTCTCGCGCTCCTAAGTATTCTCTACCTAC 28377 Query 423 CCAC 426 |||| Sbjct 28376 CCAC 28373 >seq782 Length=84039 Score = 98.7 bits (108), Expect = 3e-18 Identities = 136/188 (72%), Gaps = 8/188 (4%) Strand=Plus/Plus Query 108 GAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAA 167 ||||||| ||||||||||| |||||| ||||||||| ||||| | |||||||||| || Sbjct 36178 GAATTTCACTACCTTAGGATCGTTATAGTTACGGCCACCGTTCATCGGGGCTTCGGTCGC 36237 Query 168 GAGCTTCGCGTTAGC-TAACCCCATCAA-----TTAACCTTCCGGCACCGGGCAGGCGTC 221 ||| | | || | | | ||| ||| || |||||||||||| ||||| |||| Sbjct 36238 CGGCTCCCC--TATCATCAGGCCACCAACTTCCTTGACCTTCCGGCACTGGGCAAGCGTT 36295 Query 222 ACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAG 281 | ||| |||| | ||| || ||| | ||| ||||| |||| | ||||||| | Sbjct 36296 AGCCCCCATACATGGTCTTACGACTTTTCGGAGACCTGTGCTTTTGGTGAACAGTCACCT 36355 Query 282 CGGCCTGG 289 ||||||| Sbjct 36356 GGGCCTGG 36363 >seq838 Length=77650 Score = 93.3 bits (102), Expect = 1e-16 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 34 TTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGA 93 |||||| ||| ||| ||||||| | | |||||||||||| |||||||| || ||| Sbjct 47288 TTTCACCGAGCCTCTCTCCGAGACAGTGTCCACATCGTTACGCCTTTCGTGCAAGTTGGA 47347 Query 94 ACTTACCCGACAAGGAATTTCGCTACCTTAG 124 |||||||||| |||||||||||||| ||||| Sbjct 47348 ACTTACCCGATAAGGAATTTCGCTATCTTAG 47378 >seq1191 Length=46946 Score = 75.2 bits (82), Expect = 3e-11 Identities = 65/81 (80%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 80 TCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTAC 139 ||||| ||| |||||| ||| |||||||||||| |||| ||||| ||| |||| || || Sbjct 31458 TCGTGTGGGTTGGAACTCACCTGACAAGGAATTTGGCTATCTTAGAACCATTATAGTCAC 31399 Query 140 GGCCGCCGTTTACCGGGGCTT 160 ||||| ||| | ||||||| Sbjct 31398 AGCCGCTGTTCATAGGGGCTT 31378 >seq258 Length=213163 Score = 75.2 bits (82), Expect = 3e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| ||||||| |||| ||| |||| | ||| | ||||| ||| Sbjct 50586 TTGACCTTCCGGCACTGGGCAGGTGTCAGCCCCCATACATGGTCTTACTACTTTGCGGAG 50645 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||||||| ||||||||||| |||||| | || ||||| Sbjct 50646 ACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGATCACTGCGACC 50691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260447039040