Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq680 223 1e-55 seq1165 215 2e-53 seq327 178 4e-42 seq241 165 2e-38 seq414 129 2e-27 seq89 125 2e-26 seq568 118 3e-24 seq99 114 4e-23 seq1170 111 5e-22 seq24800 105 2e-20 seq247 98.7 3e-18 seq29 87.8 5e-15 seq782 78.8 3e-12 seq18 75.2 3e-11 >seq680 Length=98399 Score = 223 bits (246), Expect = 1e-55 Identities = 187/227 (82%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 5458 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 5517 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || | || Sbjct 5518 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCATC 5577 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | ||||| ||| || | |||||| ||||| | ||| ||||| Sbjct 5578 TTGAAAGAGAGGGGT-GCCTTC-GGGAACGCGGACACAGGTTGTGCATAGCTGTTGTCAG 5635 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 |||||| ||| || |||||||||||||||| |||||||||||||||| Sbjct 5636 CTCGTGCCGTAAGCTGTTGGGTTAAGTCCCACAACGAGCGCAACCCT 5682 >seq1165 Length=48719 Score = 215 bits (238), Expect = 2e-53 Identities = 242/320 (76%), Gaps = 3/320 (1%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| | |||||||||||||||||||| | |||||| ||| |||||| |||||| || Sbjct 34893 CGCAAGAATAAAACTCAAAGGAATTGACGGTGGCCCGCATAAGTGGTGGAACATGTGATT 34952 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 || ||| | |||| | | ||||||||||| |||||||| | | | | ||| || | Sbjct 34953 TACTTCAATGCAAAACAATGAACCTTACCAGGGCTTGACATGCACAAATCA-TCTTGAAA 35011 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 ||||| | |||||| | | | ||||||| || |||| |||| | |||| ||| Sbjct 35012 GAGAGGGGAGCA-TTCGGGAGCGCG-GACACAGGTGGTGTATGGCTGTCTTTAGCTTGTG 35069 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCAT 246 ||| || ||||||||||||||| |||| |||||||| ||| | |||||||||| | | Sbjct 35070 CCGTAAGGTGTTGGGTTAAGTCCTGCAATGAGCGCAAACCTCTTGTTTAGTTGCCACCGT 35129 Query 247 TAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTC 306 | |||| || || | || ||||| ||||| || | ||||||||||| ||| || ||| Sbjct 35130 TGAGTTTGGAACCTTGAGCGGACTGTTGGTGATAAGCAGGAGGAAGGTGAGGATGATGTC 35189 Query 307 AAATCATCATGCCCCTTATG 326 || |||||||||| |||||| Sbjct 35190 AAGTCATCATGCCTCTTATG 35209 >seq327 Length=183925 Score = 178 bits (196), Expect = 4e-42 Identities = 185/240 (77%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 ||||| |||||||||||||||||| ||||| | ||||| || || |||||||||||| Sbjct 87828 GCAAGAATGAAACTCAAAGGAATTGGCGGGGGTCTGCACATGCAATGAAGCATGTGGTTT 87887 Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCT--AGAG 125 ||||||| |||||| | |||||||| | |||||||| || ||| ||| | | || Sbjct 87888 AATTCGATACAACGCACAAAACCTTACTAGGGCTTGACATGCTGTGAATCCTTTTGAAAG 87947 Query 126 ATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGT 185 | |||||| ||||| ||| | || ||| ||| ||||||| | ||||||||| || Sbjct 87948 AGAGAGGT---GCCTTC-GGGAATGCAGACACATGTGGTGCATGGCTATCGTCAGCTTGT 88003 Query 186 GTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCA 245 | | | || ||||||||||||||| ||||| ||||||||||| | |||||||||| || Sbjct 88004 GCCATAAGGTGTTGGGTTAAGTCCTGCAACAAGCGCAACCCTCGTGTTTAGTTGCCACCA 88063 >seq241 Length=220789 Score = 165 bits (182), Expect = 2e-38 Identities = 136/163 (83%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 192 AGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGT 251 || |||||||||||||||| ||| |||||||||||| | | |||||||||| | || ||| Sbjct 54539 AGGTGTTGGGTTAAGTCCCACAATGAGCGCAACCCTCATGTTTAGTTGCCACCGTTGAGT 54480 Query 252 TGGGCACTCTA-AGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAAT 310 | || || ||| || |||||||||||| || ||||||||||||| ||| || ||||| | Sbjct 54479 TTGGAAC-CTAGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGATGTCAAGT 54421 Query 311 CATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGG 353 |||||||||||||||| |||||| ||||| || || |||||| Sbjct 54420 CATCATGCCCCTTATGCCTTGGGCAACACATGTACTTCAATGG 54378 >seq414 Length=154279 Score = 129 bits (142), Expect = 2e-27 Identities = 148/198 (75%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 233 TTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAG 292 |||||||| | || |||| || || | || |||||||||||| || | |||||||| Sbjct 56289 TTAGTTGCTACTGTTGAGTTTGGAACCTTCAGCAGACTGCCGGTGATAAGCTGGAGGAAG 56230 Query 293 GTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATG 352 || ||| ||||| || |||||||||| |||||| ||||| ||||||||||||||||| Sbjct 56229 GTAAGGATGACGTTAAGTCATCATGCCTCTTATGCCCTGGGCGACACACGTGCTACAATG 56170 Query 353 GACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGT 412 | |||||||| | || | | |||| ||| || ||| ||| ||| |||||| Sbjct 56169 GCTGGGACAAAGGGTCGTGATCCTGAGAGGGTGAGCTAACTCCA-AAATCTGTCCTCAGT 56111 Query 413 TCGGATTGTAGTCTGCAA 430 || |||||||| ||| || Sbjct 56110 TCAGATTGTAGGCTGTAA 56093 >seq89 Length=381718 Score = 125 bits (138), Expect = 2e-26 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||||||||||| ||| || ||||||||||||||||||||| Sbjct 230408 ACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAAC 230349 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGC 272 |||||||||||| | |||||||||| || |||| || || || || |||||| Sbjct 230348 GAGCGCAACCCTCGTGTTTAGTTGCCACTGTTGAGTTTGGAACCCTGAGCAGACTGC 230292 >seq568 Length=117302 Score = 118 bits (130), Expect = 3e-24 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 17 AAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAG 76 ||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||| | Sbjct 79836 AAACTCAAAGGAATTGATGGGGGCCCACACAAGCGGTGGAGCATGTGGTTTAATTCGATG 79895 Query 77 CAACGCGAAGAACCTTACCA 96 ||| ||||| |||||||||| Sbjct 79896 CAAAGCGAAAAACCTTACCA 79915 >seq99 Length=359202 Score = 114 bits (126), Expect = 4e-23 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| |||||| ||||||||||||| || || || | |||||||||||| ||| || Sbjct 8941 ACAGGTGGTGCATGATTGTCGTCAGCTCATGCTGTAAGGTATTGGGTTAAGTCTCGCGAC 8882 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275 |||||| |||| | |||||||||| |||| |||| || ||||| ||| |||||| | Sbjct 8881 AAGCGCATCCCTCGTGTTTAGTTGCCACCATTGAGTTTGGAACTCTGAGTAAACTGCCAG 8822 Query 276 TGACAA 281 ||| || Sbjct 8821 TGATAA 8816 >seq1170 Length=48435 Score = 111 bits (122), Expect = 5e-22 Identities = 102/128 (80%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 213 AACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGC 272 ||| ||||||||||| | | ||||||| || | || |||| || || || ||| |||||| Sbjct 9431 AACAAGCGCAACCCTCATGTTTAGTTGTCACCGTTGAGTTTGGAACCCTGAGTAGACTGC 9490 Query 273 CGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGG 332 || ||| || ||||||||||| ||| |||||||| ||||||||| ||||||| ||| Sbjct 9491 CGATGATAAGACGGAGGAAGGTAAGGATGACGTCAAGTCATCATGCTCCTTATGCCCTGG 9550 Query 333 GCTACACA 340 || ||||| Sbjct 9551 GC-ACACA 9557 >seq24800 Length=566 Score = 105 bits (116), Expect = 2e-20 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| |||||| |||||||| ||||| |||| || |||||||||||||||||||| Sbjct 451 ACAGGTGGTGCATGACTGTCGTCAACTCGTATCGTAAGGTGTTGGGTTAAGTCCCGCAAT 510 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCAC 258 ||| |||||||| | | |||||||||| || |||| || || Sbjct 511 GAGTGCAACCCTCATGTTTAGTTGCCACTGTTGAGTTTGGAAC 553 >seq247 Length=217166 Score = 98.7 bits (108), Expect = 3e-18 Identities = 122/166 (73%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 332 GGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAA 391 ||| |||||| ||||||||||| |||||||| | || |||||||| ||| || Sbjct 197056 GGCGACACACATGCTACAATGGCTGGGACAAAGGGTCGTGATCCCGCGAGGGTGAGCTAA 197115 Query 392 TCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAA 451 ||| ||| || ||||||| |||||||| ||||||| | ||| ||||||| ||| Sbjct 197116 CTCCAAAAATCCGTCCTCAGTTTAGATTGTAGGTTGCAACTTGCCTACATGAAGCCAGAA 197175 Query 452 TCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 || ||||||||| | |||| ||| | | |||||| ||||| || Sbjct 197176 TCACTAGTAATCACCGGTCAGCCATACGGCAGTGAATTCGTTCTCG 197221 >seq29 Length=625987 Score = 87.8 bits (96), Expect = 5e-15 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||| ||||| ||| ||| | || | ||||||||| Sbjct 502170 TACGTTCGCAAGAATGAAACTCAAAGGGATTGATGGG-ACCTGTACTAATAGTGGAGCAT 502228 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGAC 105 ||||||| |||||| | || || ||||| ||||| | | |||||| Sbjct 502229 GTGGTTTCATTCGATGTAAAGCAAAGAATCTTACTAGAGCTTGAC 502273 >seq782 Length=84039 Score = 78.8 bits (86), Expect = 3e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| ||| || |||||| ||| ||||||||||||| ||||| ||||||||||||||| Sbjct 36617 TACGTTCGCGAGAATGAAACCCAACGGAATTGACGGGGGCCCGCGCAAGCGGTGGAGCAT 36676 Query 61 GTGGTT 66 |||||| Sbjct 36677 GTGGTT 36682 >seq18 Length=714036 Score = 75.2 bits (82), Expect = 3e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAAT 70 ||||||||||| |||||||||| | |||||||||||||||||||||||||||| Sbjct 605333 TGAAACTCAAAAAAATTGACGGGAGCTTGCACAAGCGGTGGAGCATGTGGTTTAAT 605278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503578955200