Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq871 295 1e-77 >seq871 Length=75021 Score = 295 bits (326), Expect = 1e-77 Identities = 244/294 (83%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||| |||||| |||||||||||||||||| Sbjct 34630 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATTAGTAGGATAAAACTAACCTGTCTCA 34572 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||| |||||||| ||||||| ||||||||| |||||||||||||||||| ||| || Sbjct 34571 CGACAGTCTAAACACAGCTCATGTTCCCTATCGGTGGGTGAACAATCCAACACTTGGTGA 34512 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||||| | |||||||||||||| ||||| ||||||||||||||||| | |||||| Sbjct 34511 ATTCTGCATGACAATGATAGGAAGAGCTGACATTGAAGGATCAAAAAGCAATGGCGCTAT 34452 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||| || ||||||| | |||| ||||| || ||||| || ||||||||| | Sbjct 34451 GAACGCTTGGTTGTCACAAGCTAATTAT-CCTGT-ATACCTTTTTTGACACCTCTAGTTT 34394 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 |||||| ||| || ||||||| |||||||||| ||||||||||| ||| ||| Sbjct 34393 CAAATTACGAAGGTTTAAAGGACTGATAGGCCACGCTTTCATGGTTCGTAATCA 34340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854160810720