Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq6837 129 1e-27 seq857 102 2e-19 >seq6837 Length=1256 Score = 129 bits (142), Expect = 1e-27 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | || ||| ||||||| |||||||||| |||| | ||| Sbjct 372 GGGACAGTCTCAGGTAGACAATTTCTATGGGGCGTAGGCCTCCCAAAAGGTAATGAAGGT 431 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||||| |||| | | | || || | | |||||||||||| ||||| Sbjct 432 GTGCAAAGATTTCCTCGGGTCAAACAGAGGTTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 490 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | || | ||| | |||| ||| |||| ||||||||||||| |||| ||||| | ||| Sbjct 491 GCTTCATTGCAAGACCCATCCGTCGAGCAAGGACGAAAGTCGGCCTTAGTGATCTGACGG 550 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| |||||| | |||||||| |||||||||| ||| || |||||| Sbjct 551 TGCTGAGTGGAACAGTCGTCGCTCATCGGATAAAAGTTACTCTAGGGATA 600 >seq857 Length=76063 Score = 102 bits (112), Expect = 2e-19 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 216 AAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCT 275 ||||||| ||| | | ||||| || | |||| | ||| |||||||||||||||||| || Sbjct 28173 AAAGGCAGAAGAGAGATTGACCGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCT 28114 Query 276 TAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGG 335 || |||| | | |||||| ||||| | ||||||| | |||||||||| ||| || || Sbjct 28113 TAGTGATATGACCATGCTGAGTGGAAGGACCGTCGCGCAACGGATAAAAATTACTCTAGG 28054 Query 336 GATA 339 |||| Sbjct 28053 GATA 28050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982124977120