Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq6837 104 3e-20 seq102 95.1 1e-17 >seq6837 Length=1256 Score = 104 bits (114), Expect = 3e-20 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| ||||| | || ||| ||| ||||||| || |||| | ||||||||||| Sbjct 211 GGGTCTTTCCGTCCAAGTGCAGGTTATCCGCATCTTTACAGATATGTCTATTTCACTGAG 152 Query 85 CTCACGGTTGA-GACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | | ||||| |||||| | ||||| |||||||||||| ||| Sbjct 151 C-CTCTCTCCAAGACAGTGCCCAGGTCGTTACACCTTCCGTGCGGGTCGGAACTTATCCG 93 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||| | ||||||||| Sbjct 92 ACAAGGAATTTCGCTACCATTGGACCGTTA 63 >seq102 Length=349948 Score = 95.1 bits (104), Expect = 1e-17 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 55 CATCTTCACCGATACTACAATTTCACTGAGCTCACGGT-TGAGACAGNNNNNNNNNNNNT 113 ||||||||| || | |||||||||||| | | | |||||||| | Sbjct 210245 CATCTTCACAGACATGTGTATTTCACTGAGC-CTCTCTCTGAGACAGTGCCCAGATCGTT 210303 Query 114 ACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || || || ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 210304 ACGCCTTTAGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCAACCTTAGGACCGTTA 210363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547051598505