Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1036 159 7e-37 seq318 159 7e-37 seq1853 118 2e-24 seq1871 107 4e-21 seq1288 100 6e-19 seq13601 82.4 2e-13 seq913 78.8 2e-12 seq497 78.8 2e-12 >seq1036 Length=59450 Score = 159 bits (176), Expect = 7e-37 Identities = 169/218 (78%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | |||| || ||| ||| || |||| || ||| ||||||| | Sbjct 20680 CTTTACAAGCGGCATTGCCCTTGTT-CACTCACACGATATTGT-TGAATCGGGCTTTCAC 20623 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||| ||||| |||||||||||||||| || | |||||| || ||||||||||| || Sbjct 20622 CCATTATCCAAGATTCCCCACTGCTGCCCCCTGG-GGAGTCAGGGTCGTGTCTCAGTCCC 20564 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 20563 AGTGTGGCTGATCATCCAAATAGACCAGGTAGGTATCATTGGCTTGGTTAGCCTTTACCT 20504 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGC 216 |||||||| ||||| | | ||||||||| ||||| Sbjct 20503 GACCAACTACCTAATACTATGCAGGCTCATCAAATAGC 20466 >seq318 Length=187033 Score = 159 bits (176), Expect = 7e-37 Identities = 164/211 (78%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||| | |||| ||||| |||||| || Sbjct 86196 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGTGATATTGT-TGGATTGGGCTTTAGC 86139 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| | |||||||||||| | Sbjct 86138 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGAGCCGTGTCTCAGTCCT 86079 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||| |||| || || | ||| | | |||||| |||| |||||| Sbjct 86078 AGTGTGGTTGATCATCTGAAAAGACTAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 86019 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATC 209 |||||| | ||||| | || ||||||||| Sbjct 86018 AACCAACAACCTAATACTACGCAGGCTCATC 85988 >seq1853 Length=15786 Score = 118 bits (130), Expect = 2e-24 Identities = 129/167 (77%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 11 CGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAAT 70 || || |||||| | | |||| |||||| || |||||||||| ||||||| | Sbjct 9473 CGTAGGCCTTCTACCTC-CACGTTGCATTG-CTCCGTCAGGCTTTCACCCATTGCGGGAA 9416 Query 71 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGAT 130 |||||||| |||||||||| ||||||||||| ||||||||| | ||||||||||||| Sbjct 9415 ATTCCCCA-TGCTGCCTCCGATAGGAGTCTGGGTCGTGTCTCAATCTCAGTGTGACTGAT 9357 Query 131 CATCCTCTCAGACCAGTTACGG---ATCGTCGCCTTGGTGAGCCATT 174 |||| |||| ||||| ||| | ||| ||||||||| || |||| Sbjct 9356 CATCTTCTCGAACCAGCTACTGATCATCATCGCCTTGGGAAGTCATT 9310 >seq1871 Length=15214 Score = 107 bits (118), Expect = 4e-21 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 18 CTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCC 77 |||||| ||| || ||| |||| |||||| ||||||| |||||||||||| |||||| Sbjct 638 CTTCTT-CACTCATGCGATATTGT-TGGATCGGGCTTTCACCCATTGTCCAAAGTTCCCC 695 Query 78 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 | ||||||||||| | | |||| ||| ||||||||| | ||||||| ||||||||| Sbjct 696 ATTGCTGCCTCCCATGGAAGTCGGGATCGTGTCTCAATCTCAGTGTGGTTGATCATCC 753 >seq1288 Length=41001 Score = 100 bits (110), Expect = 6e-19 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 || |||||| |||| | || |||||||| || ||||||| ||||||||| | || Sbjct 3662 TCCGGCTTTTACCCACTACGGAAAATTCCCCATTGTTGCCTCCTGTAGGAGTCCAGGTCG 3721 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||| | | | |||||| |||||||| || || | | || ||| | ||||||| | Sbjct 3722 TGTCTTAATCCTAGTGTGGCTGATCATTCTATCGGGCAAGCTACTAGTAATCGCCTTATT 3781 Query 167 GAGCCATTACCTCACCAACTAGCTAATC 194 ||| ||||||||||||||||| ||||| Sbjct 3782 AAGCTATTACCTCACCAACTAGGTAATC 3809 >seq13601 Length=910 Score = 82.4 bits (90), Expect = 2e-13 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 71 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGAT 130 |||||||||||||| | || | ||||| || |||||||||||| | ||||||||| || Sbjct 565 ATTCCCCACTGCTGTCCTCCATGGGAGTTCGGGCCGTGTCTCAGTCCTAGTGTGACTAAT 506 Query 131 CATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGC 170 ||||| ||||||| || | ||| | | |||||| ||| Sbjct 505 CATCCGAAGAGACCAGCTAAGCATCATTGGCTTGGTCAGC 466 >seq913 Length=70350 Score = 78.8 bits (86), Expect = 2e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 125 ACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAA 184 ||||| |||||||| ||||||||||| ||| |||||||||| ||| ||| ||||||||| Sbjct 54118 ACTGACCATCCTCTTAGACCAGTTACTAATCATCGCCTTGGTAAGCTATTGCCTCACCAA 54177 Query 185 CTA 187 ||| Sbjct 54178 CTA 54180 >seq497 Length=133285 Score = 78.8 bits (86), Expect = 2e-12 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 117 CCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTAC 176 ||||||| |||||||||||||| || |||||| |||| | |||||||| || ||| | Sbjct 21322 CCAGTGTAGCTGATCATCCTCTCGAACTAGTTACTGATCATTGCCTTGGTAAGTTATTGC 21263 Query 177 CTCACCAACTAGCTAA 192 |||||||||||| ||| Sbjct 21262 CTCACCAACTAGTTAA 21247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071699893600