Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq23772 86.0 2e-14 seq35 80.6 7e-13 seq11119 75.2 3e-11 >seq23772 Length=588 Score = 86.0 bits (94), Expect = 2e-14 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTC-CCCTCTCCGGGGTTCTTTTC 313 |||| |||| ||||| | | ||| | ||| | || | | |||| ||||||||||| Sbjct 108 ACTGATTGTTCGCATCGGATCTCAAGTTCTCTATCGCACTCCCTAAATAGGGTTCTTTTC 167 Query 314 GCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGA 373 ||||||||||||||||||| || |||||||||||| | || | | |||| ||| ||| Sbjct 168 GCCTTTCCCTCACGGTACTTGTACACTATCGGTCATTGAGGA-AACTTAGGCTTAAAGGG 226 Query 374 TGGTCCCCC 382 ||| ||||| Sbjct 227 TGGGCCCCC 235 >seq35 Length=603113 Score = 80.6 bits (88), Expect = 7e-13 Identities = 78/98 (80%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 266 GCATACGGTTTCAGGAT--CTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCT 323 || |||||||||| | | ||||||||| | ||| ||| |||||| | |||||| | Sbjct 347610 GCCTACGGTTTCATGTTTTCTATTTCAC-CTCCTAATAGGGTTTCTTTGCATCTTTCCTT 347552 Query 324 CACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||| |||||||| ||||| |||| ||||||| Sbjct 347551 CACGGTACTACTTCACTATTGGTCATTCAGGAGTATTT 347514 >seq11119 Length=1024 Score = 75.2 bits (82), Expect = 3e-11 Identities = 208/306 (68%), Gaps = 25/306 (8%) Strand=Plus/Plus Query 64 TAGTT--ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATT 121 ||||| |||||||||| || | || |||| ||||||| | ||| || | ||| || Sbjct 193 TAGTTTCACCCAACCTT-CATCTTGATTATAG-ATAGATCACTCGGGTT-CAAGTCCATA 249 Query 122 TCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT--ATTCGGT 179 | || ||||| | |||| |||||| |||| ||||| | |||| | |||| | Sbjct 250 AGC-AGTGACTATT-GACCTATGAAGACTTACTTT-CGCTATGGCTCCAGTGGATTCTCT 306 Query 180 TAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA 239 ||| | | ||||| || |||||| | | |||| | ||| ||| | || |||| Sbjct 307 TAACCAA-GTCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCATGCTGTCAG--- 362 Query 240 ACAAAGT---GGGCTC---CCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTC 293 ||| |||||| ||||||||| || |||||||| | | ||||||||||| Sbjct 363 ----AGTCTCGGGCTCTTCCCACTGCTTAGGAGCTTACGGTTTTATGTTCTATTTCACTT 418 Query 294 CCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAG 353 ||| | ||||||| || | |||||||| ||||| | | |||||| | || |||| Sbjct 419 CCCGAT-GATGGTTCTTCTCATCATTCCCTCATGGTACCACTACACTATTGACCACTCAG 477 Query 354 TAGTAT 359 ||||| Sbjct 478 GAGTAT 483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241252414080