Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1036 107 4e-21 seq318 98.7 2e-18 seq1853 87.8 4e-15 seq1288 78.8 2e-12 >seq1036 Length=59450 Score = 107 bits (118), Expect = 4e-21 Identities = 115/151 (76%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 9 TGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGG 68 || ||| || |||| |||||| | ||| || ||||||||||||| || | |||||| || Sbjct 20638 TGAATCGGGCTTTCACCCATTATCCAAGATTCCCCACTGCTGCCCCCTGG-GGAGTCAGG 20580 Query 69 GCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCT 128 | ||||||||||||||| |||||| | ||| || || || | || ||| | |||| Sbjct 20579 GTCGTGTCTCAGTCCCAGTGTGGCTGATCATCCAAATAGACCAGGTAGGTATCATTGGCT 20520 Query 129 TGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||| || ||| || |||||||||||||| Sbjct 20519 TGGTTAGCCTTTACCTGACCAACTACCTAAT 20489 >seq318 Length=187033 Score = 98.7 bits (108), Expect = 2e-18 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 16 GGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGT 75 || ||| |||||||| ||| || ||||||||||||| ||||| |||||| | ||||||| Sbjct 86147 GGCTTTAGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGAGCCGTGT 86088 Query 76 CTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGG 135 |||||||| | ||||| | ||| | || | |||| ||| | |||||||| | Sbjct 86087 CTCAGTCCTAGTGTGGTTGATCATCTGAAAAGACTAGCTAAGCATCATTGGCTTGGTCAG 86028 Query 136 CTATTATCTCACCAACTACCTAAT 159 | ||| || |||||| ||||||| Sbjct 86027 CCTTTACCTAACCAACAACCTAAT 86004 >seq1853 Length=15786 Score = 87.8 bits (96), Expect = 4e-15 Identities = 91/118 (77%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | | || ||||| |||||||||| ||||||||| Sbjct 9445 GCTCCGTCAGGCTTTCACCCATTGCGGGAAATTCCCCA-TGCTGCCTCCGATAGGAGTCT 9387 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTC 124 ||| ||||||||| || || |||| | | ||| | |||| || ||||| |||| || Sbjct 9386 GGGTCGTGTCTCAATCTCAGTGTGACTGATCATCTTCTCGAACCAGCTACTGATCATC 9329 >seq1288 Length=41001 Score = 78.8 bits (86), Expect = 2e-12 Identities = 106/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 || || ||| |||| | | || || ||||| || ||||||| ||||||||| || || Sbjct 3662 TCCGGCTTTTACCCACTACGGAAAATTCCCCATTGTTGCCTCCTGTAGGAGTCCAGGTCG 3721 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||| | ||| | |||||| | ||| || || | | ||||| | ||| ||| | Sbjct 3722 TGTCTTAATCCTAGTGTGGCTGATCATTCTATCGGGCAAGCTACTAGTAATCGCCTTATT 3781 Query 133 GGGCTATTATCTCACCAACTACCTAATC 160 ||||||| ||||||||||| ||||| Sbjct 3782 AAGCTATTACCTCACCAACTAGGTAATC 3809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998120497920