Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq6837 206 4e-51 seq27 122 1e-25 seq10927 86.0 1e-14 seq26 86.0 1e-14 >seq6837 Length=1256 Score = 206 bits (228), Expect = 4e-51 Identities = 202/259 (78%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 ||||||||| ||||||| |||||| ||| |||| ||| |||||| | | | |||| Sbjct 910 CTTAGATGCTTTCAGCTGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACTGCGGGCA 851 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | || |||| |||||||||| |||| || ||||||||| ||||| ||| || |||| Sbjct 850 TGATAATTGGTACACCAGAGGTGCGTCCTTCTCGGTCCTCTTCTACTAGGGAAAGGTCCT 791 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| || || ||||| || ||| |||||||||| |||| | | ||||| ||||| Sbjct 790 CTCAATGCTCTAACACCCACACCGAATATGGACCGAACTATCTCACAATGTTCTAAACCC 731 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| || |||||||||||||||| |||||||||||| || |||| |||||||| Sbjct 730 AGCTCACGTACCGCTTTAATGGGCGAACAACCCAACCCTTGGAACATACTATAGCCCCAG 671 Query 256 GATGAGACGAGCCGACATC 274 | | | ||||||||||| Sbjct 670 GTGGTAAAGAGCCGACATC 652 >seq27 Length=631211 Score = 122 bits (134), Expect = 1e-25 Identities = 164/229 (72%), Gaps = 22/229 (10%) Strand=Plus/Plus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 || |||||| ||||| ||| |||||| ||||| ||| ||||| ||||| | ||| | Sbjct 121877 AATTTAGCTGTCCAGCGCTGCTATTGGCATAACAACCGGTACACCATAGGTTGGCCCAAC 121936 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCC----TACGCCCACGACGGAT 162 | |||||||||||||| || ||||||| || | ||| || || ||| ||| Sbjct 121937 CAAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGAT 121996 Query 163 AGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAA-TGGGCGA 221 ||| ||||||||||||| ||||||||| || |||||| || ||| ||| Sbjct 121997 AGGAACCGAACTGTCTCACGACGTTCTAAA-------------CCTCTTGAATTGGCCGA 122043 Query 222 ACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGA 270 ||| || | ||||||||| ||||| |||||||||| || ||| ||| Sbjct 122044 ACAACCGA----TTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGA 122088 >seq10927 Length=1033 Score = 86.0 bits (94), Expect = 1e-14 Identities = 90/118 (76%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCG---CGTGCCTCTTTAATG 216 ||| || ||| || ||| || ||| ||||| |||||| ||| | | || ||| ||| Sbjct 478 GATGGGAACCAAATTGTTTCACGATGTTCTAAACCCAACTCATCACATTCCACTTGAATC 537 Query 217 GGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 ||| |||| || |||||||||||||| ||| | || | ||||| |||||| ||||||| Sbjct 538 GGCCAACAACCAAACCCTTGGGACCTTCTTTAACCGCTGGATGTGACGAGTCGACATC 595 >seq26 Length=649212 Score = 86.0 bits (94), Expect = 1e-14 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||| ||| ||||||||||| | ||||| ||||||||| | ||| || |||||||||| Sbjct 328325 GATATGGATCGAACTGTCTCACTACGTTTTGAACCCAGTTTACGTACCGTTTTAATGGGC 328266 Query 220 GAACAGCCCAACCCTTG 236 |||||||||||||||| Sbjct 328265 AAACAGCCCAACCCTTG 328249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780588245820