Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1036 134 3e-29 seq318 125 2e-26 seq1853 120 7e-25 seq1871 100 7e-19 >seq1036 Length=59450 Score = 134 bits (148), Expect = 3e-29 Identities = 160/215 (74%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | |||| |||| ||| || || | || ||| ||||| | ||| Sbjct 20680 CTTTACAAGCGGCATTGCCCTTGTTCACTCACACGATATTGTTGAATCGGGCTTTCACCC 20621 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||| | ||| |||||||||||||||| || | |||||| || ||||||||||| |||| Sbjct 20620 ATTATCCAAGATTCCCCACTGCTGCCCCCTGG-GGAGTCAGGGTCGTGTCTCAGTCCCAG 20562 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| ||||||| |||| ||| | | || ||| ||| ||||| Sbjct 20561 TGTGGCTGATCATCCAAATAGACCAGGTAGGTATCATTGGCTTGGTTAGCCTTTACCTGA 20502 Query 182 CCAACTAGCTAATCCCATCTGGGTTCATCCGATAG 216 ||||||| ||||| | || || ||||| |||| Sbjct 20501 CCAACTACCTAATACTATGCAGGCTCATCAAATAG 20467 >seq318 Length=187033 Score = 125 bits (138), Expect = 2e-26 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||| | || | || || ||||| |||| Sbjct 86196 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGTGATATTGTTGGATTGGGCTTTAGCCC 86137 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| | |||||||||||| | || Sbjct 86136 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGAGCCGTGTCTCAGTCCTAG 86077 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 ||||| || ||||| |||| ||||| | ||| | | || ||| ||| ||||| Sbjct 86076 TGTGGTTGATCATCTGAAAAGACTAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTAA 86017 Query 182 CCAACTAGCTAAT 194 ||||| | ||||| Sbjct 86016 CCAACAACCTAAT 86004 >seq1853 Length=15786 Score = 120 bits (132), Expect = 7e-25 Identities = 115/146 (79%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 14 CGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATAT 73 || ||||||||| | | |||| |||| ||| | |||||||| | ||||||| | | || Sbjct 9473 CGTAGGCCTTCTACCTCCACGTTGCATTGCTCCGTCAGGCTTTCACCCATTGCGGGAAAT 9414 Query 74 TCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCA 133 |||||| |||||||||| ||||||||||| ||||||||| | ||||||| ||| ||| Sbjct 9413 TCCCCA-TGCTGCCTCCGATAGGAGTCTGGGTCGTGTCTCAATCTCAGTGTGACTGATCA 9355 Query 134 TCCTCTCAGACCAGCTAGGGATCGTC 159 || |||| |||||||| |||| || Sbjct 9354 TCTTCTCGAACCAGCTACTGATCATC 9329 >seq1871 Length=15214 Score = 100 bits (110), Expect = 7e-19 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 |||||||| || ||| || | || ||| ||||| | |||||||| ||| ||||||| Sbjct 638 CTTCTTCACTCATGCGATATTGTTGGATCGGGCTTTCACCCATTGTCCAAAGTTCCCCAT 697 Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140 ||||||||||| | | |||| ||| ||||||||| | |||||||| || |||||| Sbjct 698 TGCTGCCTCCCATGGAAGTCGGGATCGTGTCTCAATCTCAGTGTGGTTGATCATCCAAAA 757 Query 141 AGACCAGCTA 150 ||| |||||| Sbjct 758 AGATCAGCTA 767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222057789120