Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq318 187 7e-45 seq1036 172 2e-40 seq1871 84.2 7e-14 >seq318 Length=187033 Score = 187 bits (206), Expect = 7e-45 Identities = 234/318 (74%), Gaps = 10/318 (3%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| | |||||| |||||| |||| |||||| | | ||| |||| || | Sbjct 86004 ATTAGGTTGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTAGTCTTTTCAG 86063 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| ||||| | | |||||||||||| | ||||| ||||| ||||||||||||| Sbjct 86064 ATGATCAACCACACTAGGACTGAGACACGGCTCGGACTCCCACGGGGGGCAGCAGTGGGG 86123 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| || || ||| | |||||| || ||||| | | Sbjct 86124 AATCTTGGACAATGGGCTAAAGCCCAATCCAACAATATCACGTGAGTGAAGAAGGGCAAT 86183 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | | ||| ||||| ||| ||||| ||||||| Sbjct 86184 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCACGATCATGACAAGACTCGAGGAAGAAGCCC 86243 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG-----CTAGCGTTATCCGG 458 |||| |||| |||||||| ||||||||||| ||| ||||| | || ||| | || Sbjct 86244 CGGCAAACTCCGTGCCAGTAGCCGCGGTAAGACGGGGGGGGGGGGTCAAGTGTTTTTTGG 86303 Query 459 AATTACTGGGGCGTAAAG 476 ||| | | |||||||||| Sbjct 86304 AATGA-TTGGGCGTAAAG 86320 >seq1036 Length=59450 Score = 172 bits (190), Expect = 2e-40 Identities = 238/327 (73%), Gaps = 7/327 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| || | | || || Sbjct 20489 ATTAGGTAGTTGGTCAGGTAAAGGCTAACCAAGCCAATGATACCTACCTGGTCTATTTGG 20548 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| ||||||||||| || ||||| | || ||||||||||||| Sbjct 20549 ATGATCAGCCACACTGGGACTGAGACACGACCCTGACTCC-CCAGGGGGCAGCAGTGGGG 20607 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| | |||||| |||||| ||| || ||| || ||||| || |||| | | Sbjct 20608 AATCTTGGATAATGGGTGAAAGCCCGATTCAACAATATCGTGTGAGTGAACAAGGGCAAT 20667 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || |||| | ||| ||||| ||| |||||||||||| Sbjct 20668 GCCGCTTGTAAAGCTCTTTCATCAAGTGTGCGATCATGACATGACTCAAGGAGGAAGCCC 20727 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 | || ||| | ||||||||||||| || || ||||| ||| ||| | |||||| | Sbjct 20728 CAGCCAACACTGAGCCAGCAGCCGCGACAAGAC-AGGGGGGGTAGTGTTCTTCGGAATGA 20786 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || |||||||||| ||||| ||| Sbjct 20787 CT-AAGCGTAAAGGGCATGTAGGCGGT 20812 >seq1871 Length=15214 Score = 84.2 bits (92), Expect = 7e-14 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || ||||| ||||| || | ||||||||| ||| ||| | | ||||||||||| ||| Sbjct 753 GGATGATCAACCACACTGAGATTGAGACACGATCCCGACTTCCATGGGAGGCAGCAATGG 694 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAG 341 |||| ||| |||||||| |||||| ||| || ||| ||| |||| || |||| Sbjct 693 GGAACTTTGGACAATGGGTGAAAGCCCGATCCAACAATATCGCATGAGTGAAGAAG 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497180746880