Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq774 86.0 2e-14 seq680 80.6 6e-13 seq318 80.6 6e-13 seq29 77.0 8e-12 seq679 75.2 3e-11 seq410 75.2 3e-11 >seq774 Length=85106 Score = 86.0 bits (94), Expect = 2e-14 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 169 GAGTGCAGGAGGGGCA-AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGA 227 |||| | | ||||||| || ||| |||| || |||| ||||||| ||||| || | | Sbjct 46478 GAGTACGGTAGGGGCAGAGGGGATTTCCG-GTAGAGCGATGAAATGTGTAGAGATCGGAA 46536 Query 228 GGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGT 287 |||||||| || ||| || || ||| ||| ||| |||||| | ||||| | Sbjct 46537 AGAACACCAACGGTGAAAGCACATTTTTGGGCTGACACTAACACTGGGAGACGAAAACTA 46596 Query 288 GGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 321 ||||||||||| ||||||||||||| ||| ||| Sbjct 46597 GGGGAGCAAACGGGATTAGATACCCCTGTAATCC 46630 >seq680 Length=98399 Score = 80.6 bits (88), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 4/132 (3%) Strand=Plus/Plus Query 279 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAA 338 ||||||| ||||||| || |||||||||||| ||||||| || |||||||||| | Sbjct 5330 CGAAAGCTAGGGGAGCGAATGTGATTAGATACCCCAGTAGTCCTAGCTGTAAACGATGGA 5389 Query 339 TACTAGGTGTCGGGGCGCAT--AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCC 396 || |||||| | | ||| || | || | || | | ||| ||||| ||||||| || Sbjct 5390 TATTAGGTG-CTGTGCGTATCGACCTG-TGTAGTTCTGTAGCTAACGCGTTAAGTATCCC 5447 Query 397 ACCTGGGGAGTA 408 ||||||||||| Sbjct 5448 GCCTGGGGAGTA 5459 >seq318 Length=187033 Score = 80.6 bits (88), Expect = 6e-13 Identities = 74/94 (79%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG-- 59 ||| ||||| ||||||||||| |||| |||||||| ||||||||||| ||| ||||| Sbjct 86227 ACTCGAGGAAGAAGCCCCGGCAAACTCCGTGCCAGTAGCCGCGGTAAGACGGGGGGGGGG 86286 Query 60 ---CTAGCGTTATCCGGAATTACTGGGCGTAAAG 90 | || ||| | ||||| | ||||||||||| Sbjct 86287 GGTCAAGTGTTTTTTGGAATGATTGGGCGTAAAG 86320 >seq29 Length=625987 Score = 77.0 bits (84), Expect = 8e-12 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 265 CTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACG 324 |||||| |||| ||||| |||||||||| |||||||||||||| ||||||| | Sbjct 502028 CTGACATTGAGTGAAGAAAGTTAGGGGAGCAAATGGGATTAGATACCCTAGTAGTCCTAG 502087 Query 325 CCGTAAACGATGAATACTAG 344 |||||||||||| ||| ||| Sbjct 502088 CCGTAAACGATGGATATTAG 502107 >seq679 Length=98473 Score = 75.2 bits (82), Expect = 3e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 202 AGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTG 261 |||||||||||||||||| || | | |||||||| |||||| || |||||| | | Sbjct 34069 AGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCG 34010 Query 262 TAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||||||| ||||||| ||||||| || Sbjct 34009 ACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAA 33974 >seq410 Length=156004 Score = 75.2 bits (82), Expect = 3e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 272 TGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAA 331 ||| | || ||||| || |||| |||||||||||||||||| | ||||||| |||||||| Sbjct 68068 TGAAGTTCAAAAGCATGTGGAGTAAACAGGATTAGATACCCCGATAGTCCATGCCGTAAA 68127 Query 332 CGATGA 337 ||||| Sbjct 68128 TGATGA 68133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202863164160