Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq102 111 5e-22 seq6837 109 2e-21 seq1093 96.9 1e-17 seq838 80.6 9e-13 >seq102 Length=349948 Score = 111 bits (122), Expect = 5e-22 Identities = 91/108 (84%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||| | |||| | |||||||| | || |||||||||| || |||||||||| Sbjct 210264 ATTTCACTGAGCCTCTCTCTGAGACAGT-GCCCAGATCGTTACGCCTTTAGTGCAGGTCG 210322 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTAC 457 ||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 210323 GAACTTACCCGACAAGGAATTTCGCAACCTTAGGACCGTTATAGTTAC 210370 >seq6837 Length=1256 Score = 109 bits (120), Expect = 2e-21 Identities = 156/218 (72%), Gaps = 9/218 (4%) Strand=Plus/Minus Query 267 CCGAATGCCAATACCAAGCTATAGTGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGA 325 || || |||||| ||| | | ||||||| | | |||||||| ||||| || | Sbjct 247 CCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCCGTCCAAGTGCAGGT 188 Query 326 AACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAG----CAGG 381 | |||||||||| || | ||||||| | |||| | |||||| |||| Sbjct 187 TATCCGCATCTTTACAGATATGTCTATTTCACTGAGCCTCTCTCCAAGACAGTGCCCAGG 128 Query 382 GGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 441 ||||||| || | ||||| |||||||||||| ||||||||||||||||||||| | Sbjct 127 ----TCGTTACACCTTCCGTGCGGGTCGGAACTTATCCGACAAGGAATTTCGCTACCATT 72 Query 442 GGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||| |||||||||| || | ||| ||||||||||| Sbjct 71 GGACCGTTATAGTTATGGCCACTGTTCACTGGGGCTTC 34 >seq1093 Length=54982 Score = 96.9 bits (106), Expect = 1e-17 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 |||||||| |||||| | |||||||||||||||||||||||||| | ||| ||||| Sbjct 28710 GTTACGCCTTTCGTGTGGATCGGAACTTACCCGACAAGGAATTTCTCGACCATAGGACCA 28651 Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 |||||||||| ||||| || ||| ||||||| || Sbjct 28650 TTATAGTTACGGCCGCCATTCACTAAGGCTTCAGTT 28615 >seq838 Length=77650 Score = 80.6 bits (88), Expect = 9e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 442 |||||||||| |||||||| || ||||||||||||| |||||||||||||| ||||| Sbjct 47322 TCGTTACGCCTTTCGTGCAAGTTGGAACTTACCCGATAAGGAATTTCGCTATCTTAG 47378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701923413120