Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq110 78.8 3e-12 >seq110 Length=344125 Score = 78.8 bits (86), Expect = 3e-12 Identities = 210/307 (68%), Gaps = 23/307 (7%) Strand=Plus/Plus Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 ||| | |||| |||||||||||| | | ||| | | | ||| |||| || |||||| Sbjct 59959 TCTACAGAATTGAACCCTAATTCTCAATCACCTG-TCACCACATAATAGGTCATTATCCT 60017 Query 193 ACCATC---GAAAGTTGAT-AGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCC 247 | |||| |||| |||| || | |||||||||||| | || ||| | | | || Sbjct 60018 ATCATCATTGAAAACTGATAAGAGTTAAAATTTGAATGATACGTCATTGGCACGATGACC 60077 Query 248 ATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGG--CGT-TGG--TTT 302 || || | ||||||||| |||| || || | ||| | ||| | | ||| Sbjct 60078 GTGTCATCTATCGAGTTATTATAAATCTTCA--GAAC----AAGAGTACGTATCGATTTT 60131 Query 303 TTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAA 362 || |||| |||||| || || ||| |||||||| ||| | | ||| || || | || | Sbjct 60132 TTAATCT-ATAAATGCATCCTTTCAAAAGTCGGGATTTGTTGTATGAATGAGATTCAGTA 60190 Query 363 TTACCACGGTTATCCATG--TAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 | ||| |||| ||| ||| || || ||||||||||| ||| ||||||||||| Sbjct 60191 CTCTCACAATTAT--ATGAATAG-CAGCTAGTATCAAATAAATTATATGTGATTTAATGA 60247 Query 421 GCCATTC 427 ||||||| Sbjct 60248 GCCATTC 60254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509977163520