Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq143 165 6e-36 >seq143 Length=298601 Score = 165 bits (182), Expect = 6e-36 Identities = 574/877 (65%), Gaps = 24/877 (3%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| |||| ||| || ||| |||||||| ||||| || || || || | Sbjct 57637 TGTTCCCGATCCAGTACCCGGAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTTT 57696 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGC 61182 |||| | ||||||||||| | ||| | ||||| | | || || | | | | Sbjct 57697 GGACCGCCGAGGAGGTCGACCTCTCCCAGGACATCCGCCAGTTCGAAGCCCTCACCCC-C 57755 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 | || | || ||||| | || || | || ||||| ||||| || ||||| |||||| Sbjct 57756 GACGAGAAGCACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTC 57815 Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 |||||| | | | ||| | ||||||| || || ||||||||||| ||| Sbjct 57816 CTAGAGAATCTCGCCGGTGGGTTCATGAAGGAGGTCCAGGTCGCGGAGGCGCGTGCCTTC 57875 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 |||||||||||||| ||||| ||||| ||||||| || |||||||| | ||| |||| Sbjct 57876 TACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCCTCCTCGAG 57935 Query 61363 ACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACC 61421 || ||||||| ||| | | || | | | || | ||| |||||||| || | || Sbjct 57936 ACCTACATCAAGGATTCCGCCGAGAAGAG-CCGCCTCTTCCGCGCCATCGACACTGTCCC 57994 Query 61422 -GGCG--GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTAC 61478 ||| | ||| ||| || | |||||| || |||||| | | | || | | Sbjct 57995 TTGCGTCGCGAA---GAAGGCCCAGTGGGCCCTCCGCTGGATCGACGG--CTCCGAGT-C 58048 Query 61479 ATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTT 61538 || | || || | | || || || ||||| || | || ||| ||| || Sbjct 58049 CTTCGCCGAGCGCCTCATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTT 58108 Query 61539 TGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGA 61598 ||| ||||| ||| | ||||| || || | ||||| || || |||||| ||| || Sbjct 58109 CTGCGCCATCTTCTGGCTAAAGAAGCGCGGGTTGATGCCGGGACTCACCTTCTCCAACGA 58168 Query 61599 GTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TG--TTTTGCTATTCAAACG 61655 |||||| || || ||||||||| |||| || ||||| || || || || || ||| Sbjct 58169 GTTGATCTCGCGAGACGAGGGCTTGCACTGCGATTTCGCGTGCCTTCTG-TACTCA---- 58223 Query 61656 CTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAAC 61715 ||| ||| ||| | | |||||||| || | ||| || || || ||||| Sbjct 58224 CTA-CTGAGGAAGAAGCTGAGCGAGGAGCGGGTCAAGGGGATCGTCCGCGACGCGGTGGA 58282 Query 61716 TATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGG 61775 ||||| ||| ||| || ||||| |||| | | | | || ||||| | | Sbjct 58283 GATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCGTTGGTGGGGATGAACCGGGA 58342 Query 61776 ACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTC-TGTTGGTCGATTTGGGTATGA 61834 ||| ||| ||||| || |||||||| ||||| || | | | ||| | |||| | Sbjct 58343 ACTGATGAGCCAGTACATCGAATTTGTCGCCGATCGGCTTCTGGGTGCGCTAGGGTGCG- 58401 Query 61835 AGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCA 61894 | | | || | | ||||| ||||||| ||||| |||| ||| || | || | Sbjct 58402 GGAAGGTGTACGGAGTGCAGAACCCGTTTGATTGGATGGAGCTGATATCGTTGCAGGGGA 58461 Query 61895 AGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 |||| || || |||||||| | || || || || || Sbjct 58462 AGACCAACTTCTTCGAGAAGAGGGTCGGTGAGTACCA 58498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397432354146800