Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq1 250 3e-61 seq716 215 6e-51 seq257 125 8e-24 seq964 107 2e-18 seq139 86.0 7e-12 >seq1 Length=1764766 Score = 250 bits (276), Expect = 3e-61 Identities = 272/361 (75%), Gaps = 0/361 (0%) Strand=Plus/Minus Query 162175 TTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCA 162234 ||| || | || |||| || || ||||| || |||||||| || ||||| || ||||| Sbjct 983309 TTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCC 983250 Query 162235 CAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTT 162294 || ||||| || |||||||| ||||| ||||||| |||||||||||| | || || Sbjct 983249 CAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTA 983190 Query 162295 CCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTCGT 162354 || || | ||| | |||| ||| || | || | | || || ||| | ||||| ||| Sbjct 983189 CCAGTAACTGGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGT 983130 Query 162355 GCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTC 162414 || || ||||| || ||||| || || ||||||||||| |||||||||||||| || | | Sbjct 983129 GCCTATGACTTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGC 983070 Query 162415 TACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAA 162474 |||||||| ||||| ||||| || || ||| ||||||| ||| |||| | ||||| Sbjct 983069 TACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAG 983010 Query 162475 CCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCACTGTGAATG 162534 || ||||| |||||| ||||||||||||| ||||| || | || ||||| || | | || Sbjct 983009 CCTCATGAAAACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAATTG 982950 Query 162535 G 162535 | Sbjct 982949 G 982949 >seq716 Length=92840 Score = 215 bits (238), Expect = 6e-51 Identities = 215/279 (77%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 160264 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACA 160323 || ||||||||| || |||||| ||||||| |||| |||| ||||||| ||||| || || Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 160324 CAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 160383 | ||||||||||||| || || | ||| | ||||| ||||| |||||||| || || || Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 160384 GTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAAC 160443 ||| |||||| ||||| || |||| || |||||| | | || | || ||||||| Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 160444 TGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGC 160503 ||| || || | ||||||| ||||||||||||||||| || || || || || || Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 160504 AGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGC 160542 || ||||| || || || || ||||||||||||||||| Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 125 bits (138), Expect = 8e-24 Identities = 240/352 (68%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 161896 AATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCT 161955 ||||| || || ||||| | ||| |||| ||||||||| || || || || ||||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 161956 CTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTC 162015 || |||| |||||||| || || ||||| || || ||||| || | ||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 162016 TTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTC 162075 | || || | ||||| || | |||||||| | || | || ||||||||||| || Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 162076 GC--AGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACA 162133 || ||||| ||||||| |||| |||| | ||||||||| | || | ||||| | Sbjct 14305 GCCGAGGTA--TTGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 162134 CGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGG 162193 | | | |||||| ||| | |||||| ||| ||||| || | || ||| | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 162194 AGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGG 162245 | | ||||| || |||||||| || ||| | || ||||| || ||||| || Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq964 Length=67008 Score = 107 bits (118), Expect = 2e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 162221 ACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCT 162280 |||| || ||||| || ||||| || ||| |||| ||||| |||||||| ||||||| Sbjct 23419 ACCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCT 23478 Query 162281 TTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCG 162340 ||||| | || | || || | ||| | | || ||| || | || | | || || | Sbjct 23479 TTATGTTATTTATACCAGTAACTGGTTTATAGATGAGTGCTCTTGGAGTAGTCGGTCTGG 23538 Query 162341 CTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTG 162400 || | ||| | ||||| || ||||| || ||||| || || | | ||||||| ||||||| Sbjct 23539 CTTTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCCTG 23598 Query 162401 AATTTGA 162407 ||||||| Sbjct 23599 AATTTGA 23605 >seq139 Length=308073 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 ||||||||||||||||||||||| || || ||| |||||||| || ||||| |||| Sbjct 89683 TATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGCCCTTGGATTGCTGTT 89742 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCT 160219 ||||| || ||||| || || |||||| || Sbjct 89743 GCATATTCAGCTCCTGTTGCAGCTGCTACT 89772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551183052861000