Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq1 197 2e-45 seq716 145 1e-29 seq257 134 2e-26 seq168 123 3e-23 seq272 102 1e-16 seq2 100 4e-16 seq964 84.2 3e-11 >seq1 Length=1764766 Score = 197 bits (218), Expect = 2e-45 Identities = 250/344 (73%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715 || |||| ||||| || ||||| ||||| || || ||||| || ||||| ||||||||| Sbjct 983300 ACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTT 983241 Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATG 190775 || ||||| || ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 983240 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 983181 Query 190776 GGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 190835 ||| | |||| | | | || | | ||||| ||| | || || ||||| |||||| Sbjct 983180 GGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGAC 983121 Query 190836 TTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAA 190895 || || || ||||| ||| | ||||| |||||||| || || ||||||| ||||| ||| Sbjct 983120 TTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAA 983061 Query 190896 AATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATGAG 190955 ||||| || || || || ||| ||||| | ||| |||| || ||||| || ||||| Sbjct 983060 AATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 983001 Query 190956 AATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || ||| |||| || || || || | | | || |||||||| Sbjct 983000 AACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCT 982957 >seq716 Length=92840 Score = 145 bits (160), Expect = 1e-29 Identities = 197/275 (72%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 189316 ATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 189375 ||||| | || ||| | | || ||||||| ||| |||| || ||||| |||||| | Sbjct 34192 ATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTAT 34133 Query 189376 ATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTC 189435 ||||| |||||||| || | ||| | || || || ||||| ||||| || || || ||| Sbjct 34132 ATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 34073 Query 189436 TCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAG 189495 || || |||||||| | || |||||| || | | ||||||| |||| || Sbjct 34072 AGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAATGAA 34013 Query 189496 TCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCT 189555 || || | ||||||| || || ||||| |||||||| || || || || || ||| Sbjct 34012 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCT 33953 Query 189556 CATGGATATTTCGGTCGTCTTATCTTCCAATATGC 189590 ||||| ||||| || || | |||||||||||||| Sbjct 33952 CATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 134 bits (148), Expect = 2e-26 Identities = 242/352 (69%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 190368 AATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCT 190427 ||||| || || ||||| | ||| || | |||||||||| || || || || || || Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 190428 CTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTTC 190487 ||||| | |||||||||| || || || ||||| ||||| || || || ||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 190488 CTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGTT 190547 |||| || || || || || |||| ||||| ||||| | || ||||||||||| ||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 190548 GC--AGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATA 190605 || |||||| |||| | || | || | || || |||| || |||| |||| Sbjct 14305 GCCGAGGTAT--TGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 190606 CTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAGG 190665 | || | |||||||| ||| | ||| || || | || || | || ||| | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 190666 AAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGG 190717 || | || ||||| ||||| || || ||| | || ||||| ||||||||||| Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq168 Length=274740 Score = 123 bits (136), Expect = 3e-23 Identities = 150/203 (74%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 189640 GTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGG 189699 || || ||||| |||||||| | | || | |||| |||||| || ||| | ||||| Sbjct 245235 GTAGTAGGTATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGGT 245293 Query 189700 TTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGAC 189759 || || |||||||||| | ||||| || |||||||||| | || || | || | Sbjct 245294 TTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAAT 245353 Query 189760 GTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTC 189819 | | ||||||||| ||||||||||||||| |||||||| ||||| ||||| |||||| Sbjct 245354 ATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 245413 Query 189820 CCTCTTGATCTGGCAGCAGCAGA 189842 |||| || || || || | ||| Sbjct 245414 TCTCTAGACCTAGCGGCTGTAGA 245436 >seq272 Length=206342 Score = 102 bits (112), Expect = 1e-16 Identities = 281/426 (66%), Gaps = 10/426 (2%) Strand=Plus/Minus Query 190203 CATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAA 190262 |||||| | | |||| |||| ||||||| | ||| ||||||| | ||| ||| Sbjct 147073 CATTCTTTAATGTTACTATGGGATCCTGAAGCACAATGCGATTTTACTCGTTGGTGTCAA 147014 Query 190263 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATG 190322 | | || || ||| ||||||| | || || || |||| ||||| || || | Sbjct 147013 ATAAGTGGTCTGTGGACTTTTGTTGTTCTTCATGGCATTTTCAAACTAATAGGTTTTACA 146954 Query 190323 CTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTG---C 190378 | ||||| |||||||| || || ||| || | | |||||| ||| ||| | Sbjct 146953 TTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGTATCCTTATAATATTATAATCAC 146895 Query 190379 GTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATC 190438 ||||| | ||| || | |||||||| | || || | || || || | | ||| || Sbjct 146894 ATTCTCCGCTCCAATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCAGTC 146835 Query 190439 GAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTT 190498 ||||| || | || || | || | ||| || || || || |||||| || Sbjct 146834 ----TGGTTTTTTACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCTCTTTTT 146779 Query 190499 GCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCT 190558 || || || ||||| |||| | ||||| || ||||||||||| ||||| || | | Sbjct 146778 CCAAGGGTTTCATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGT-AT 146720 Query 190559 GGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGA 190618 | | ||||| || | || |||||||| | | ||||| |||||||| | |||||| Sbjct 146719 TAGTGTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGAAGA 146660 Query 190619 TGGTGA 190624 |||||| Sbjct 146659 TGGTGA 146654 >seq2 Length=1456787 Score = 100 bits (110), Expect = 4e-16 Identities = 105/136 (77%), Gaps = 9/136 (7%) Strand=Plus/Plus Query 189528 AGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATA 189587 ||||||||| || || || || ||||||||||| ||||| || || | || |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 189588 TGCATCGTTCAACAACTCC-CGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGG 189646 ||| | ||| ||| ||||| | ||||||||| | ||||| ||||| || |||| Sbjct 1455466 TGC-TAGTT-------TCCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGG 1455517 Query 189647 GTATCTGGTTTACCGC 189662 |||| ||||||||||| Sbjct 1455518 GTATTTGGTTTACCGC 1455533 >seq964 Length=67008 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 190693 ACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCT 190752 |||| || ||||| ||||||||||| |||| || ||||| | ||||| ||||||| Sbjct 23419 ACCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCT 23478 Query 190753 TTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTG 190812 ||||| | ||| | || || | ||| | | || | | | || | | ||||| | Sbjct 23479 TTATGTTATTTATACCAGTAACTGGTTTATAGATGAGTGCTCTTGGAGTAGTCGGTCTGG 23538 Query 190813 CTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAG 190872 || | || | ||||| |||||||| || || ||||| ||| |||| |||||||| | Sbjct 23539 CTTTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCCTG 23598 Query 190873 AGTTCGAGA 190881 | || |||| Sbjct 23599 AATTTGAGA 23607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633858111630000