Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq1 210 2e-49 seq716 183 3e-41 seq257 179 4e-40 seq272 122 1e-22 seq964 107 2e-18 seq2 96.9 4e-15 seq168 91.5 2e-13 >seq1 Length=1764766 Score = 210 bits (232), Expect = 2e-49 Identities = 257/351 (73%), Gaps = 0/351 (0%) Strand=Plus/Minus Query 164553 CCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATT 164612 || ||||||| ||||| ||||| || ||||| || || |||||||| ||||| || || Sbjct 983303 CCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATC 983244 Query 164613 TTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTC 164672 ||||| ||||||| |||||| ||||||| || ||||||||| | ||||| || || Sbjct 983243 TTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTA 983184 Query 164673 ATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTAT 164732 | || | |||| ||| || |||| | ||||||| || | ||||| ||||| ||| Sbjct 983183 ACTGGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTAT 983124 Query 164733 GATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACG 164792 || || || ||||| || || | ||||| || ||||||||||||||||| | ||| || Sbjct 983123 GACTTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACC 983064 Query 164793 AAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACAC 164852 || || || ||| | || || || | ||||| |||||||| | ||| ||||| || Sbjct 983063 AAAAATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCAT 983004 Query 164853 GAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 ||| ||| |||| || ||||| ||||| | | || ||||| || ||| Sbjct 983003 GAAAACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAA 982953 >seq716 Length=92840 Score = 183 bits (202), Expect = 3e-41 Identities = 208/279 (75%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 161033 TGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACA 161092 ||||||||| || || |||||| |||| |||||||| ||| |||| || || || || || Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 161093 CAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCT 161152 | | ||||| |||||||| || | ||||| ||||| |||||||| ||||| || || || Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 161153 GTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAA 161212 ||| || || |||||||| |||| || ||| || | | ||||||| || || Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 161213 CGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGC 161272 || || || | ||||||| || |||||||| ||||| ||||| || || || || Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 161273 TGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGC 161311 ||||||||||| || || || ||||||||||||| || Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 179 bits (198), Expect = 4e-40 Identities = 252/352 (72%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 164268 AATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCT 164327 ||||| || || ||||| | ||| |||| ||| ||||| || ||||| || || || Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 164328 CTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTC 164387 || || | | ||||||||||||| ||| ||||| || || || || || ||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 164388 CTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTT 164447 || | || ||||||| || |||| |||||| | ||| | || || |||||||| ||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 164448 GC--AGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATA 164505 || ||| || | |||| |||| | || ||||||||||||| ||||| |||| |||| Sbjct 14305 GCCGAGGTAT--TGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 164506 CTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGG 164565 | || |||||||||| ||| |||||| ||| | || | || |||||| | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 164566 AAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGG 164617 || | ||||| || ||||| || || ||| |||| ||||| || || ||||| Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 Score = 93.3 bits (102), Expect = 5e-14 Identities = 100/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 164433 CATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCT 164492 || |||||||| ||||| || | | |||| |||||| || |||||||||||||| || Sbjct 19497 CACATGATGGGAGTTGCCGGAGTATTGGGTGCTGCTCTGCTATGTGCTATTCATGGCACT 19438 Query 164493 ACCGT-AGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGA 164551 ||||| | | |||| ||| |||||||||||||| ||||||| ||| || || || Sbjct 19437 ACCGTAAAAAAATATTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTGA 19378 Query 164552 GCCTACTCAAG 164562 || ||||||| Sbjct 19377 CCCAACTCAAG 19367 >seq272 Length=206342 Score = 122 bits (134), Expect = 1e-22 Identities = 286/428 (67%), Gaps = 14/428 (3%) Strand=Plus/Minus Query 164103 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAA 164162 |||||| | | |||| |||| |||||| | || | || || | | | ||||| ||| Sbjct 147073 CATTCTTTAATGTTACTATGGGATCCTGAAGCACAATGCGATTTTACTCGTTGGTGTCAA 147014 Query 164163 CTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATG 164222 | | || || ||| ||||||| | | || || |||| || || ||||| | Sbjct 147013 ATAAGTGGTCTGTGGACTTTTGTTGTTCTTCATGGCATTTTCAAACTAATAGGTTTTACA 146954 Query 164223 CTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTATTG---CG 164279 | || || |||||| |||| || ||| | ||| || ||| ||| | Sbjct 146953 TTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGTATCCTTATAATATTATAATCACA 146894 Query 164280 TTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCT 164339 ||||| | ||| |||| ||| |||| || ||| | || || || | | || ||| Sbjct 146893 TTCTCCGCTCCAATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCAGTCT 146834 Query 164340 AGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATT---CCTCTTGTTC 164396 |||| ||| | ||| ||| | || | || || || |||| |||||| ||| Sbjct 146833 ----GGTTTTTTACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCTCTTTTTC 146778 Query 164397 CTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATC 164456 | |||| || ||||| |||| | | ||||| || || |||||||| ||||| || | Sbjct 146777 C---AAGGGTTTCATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGTA 146721 Query 164457 CTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAA 164516 || ||| ||| || || |||||||| ||||| |||| |||||| |||||||| |||||| Sbjct 146720 -TTAGTGTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGAA 146662 Query 164517 GATGGTGA 164524 |||||||| Sbjct 146661 GATGGTGA 146654 >seq964 Length=67008 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 164593 ACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCT 164652 ||||||| ||||| || || ||||| ||| ||| |||||| |||||||| || |||| Sbjct 23419 ACCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCT 23478 Query 164653 TTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCG 164712 ||||| | ||| | || || | || | | || ||| || |||| | ||||||| | Sbjct 23479 TTATGTTATTTATACCAGTAACTGGTTTATAGATGAGTGCTCTTGGAGTAGTCGGTCTGG 23538 Query 164713 CACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTG 164772 | | ||| | ||||| ||||| || || ||||| || || |||| || ||||||| Sbjct 23539 CTTTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCCTG 23598 Query 164773 AATTTGAGA 164781 ||||||||| Sbjct 23599 AATTTGAGA 23607 >seq2 Length=1456787 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/142 (75%), Gaps = 7/142 (5%) Strand=Plus/Plus Query 161249 AGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATA 161308 |||||| ||||| || || || |||||||||||||| || || || |||| |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 161309 CGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGG 161368 ||| ||| | ||||| || ||||||||| | || || |||||||| || || Sbjct 1455466 TGCTAGTTTC-------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 161369 TATCTGGTTCACTGCACTTGGT 161390 ||| ||||| || || ||||| Sbjct 1455519 TATTTGGTTTACCGCTTTTGGT 1455540 >seq168 Length=274740 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/200 (71%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 161360 TGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGG 161419 ||| || ||||| ||||| ||| | | ||| | || |||||| || ||| | || || Sbjct 245234 TGTAGTAGGTATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGG 245292 Query 161420 ATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGA 161479 || || ||||| || | | | ||| || | || || | || |||| || | | Sbjct 245293 TTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAA 245352 Query 161480 CGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTT 161539 | | || |||||||| |||||||||||||| ||||| || ||||||||||| ||||| Sbjct 245353 TATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 245412 Query 161540 CCCTCTGGATCTCGCTGCTG 161559 | |||| || || || |||| Sbjct 245413 CTCTCTAGACCTAGCGGCTG 245432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559132270158000