Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq96547 147 4e-33 seq56214 129 1e-27 seq101806 125 1e-26 >seq96547 Length=10798 Score = 147 bits (162), Expect = 4e-33 Identities = 156/203 (77%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || ||| |||||| ||||||||||||||| |||| || | ||| | |||||||||||| Sbjct 622 CTATTAGTTTGAAGAAATTAGAGTGTTCAGAGCAAGCTTACCCTCTGGATACATTAGCAT 563 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | ||||| | | |||| |||| ||||| | ||| || |||||||| Sbjct 562 GGGATAACATCATAGG-CTTTCGGTCATATTGCGTTGGCCTTCGGGATCGGAGTAATGAT 504 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| | ||| ||||||||| | ||||| || |||||| ||||||||||||||||||| Sbjct 503 TAACAAGGACAGTCGGGGGCATTTGTATTTCATAGTCAGAAGTGAAATTCTTGGATTTAT 444 Query 251 TGAAGACTAACTACTGCGAAAGC 273 || || ||| |||| |||||| Sbjct 443 GAAATACGAACAACTGTGAAAGC 421 >seq56214 Length=1414 Score = 129 bits (142), Expect = 1e-27 Identities = 141/181 (78%), Gaps = 5/181 (3%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-CT-TTGCTCGAATAC 122 ||||| || ||||||||||||||||| ||||| ||||||||||| || || ||| | Sbjct 1236 GCCAGCACGTTTACTTTGAAAAAATTGGAGTGCTCAAAGCAGGCGCTACAGCCTGAACAT 1295 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGC 181 | |||||||||||| |||||||| | ||||||||||| ||||| || | ||| || Sbjct 1296 TTGTGCATGGAATAATGGAATAGGATCT-CGGTTCTATTTCGTTGGCTT-TCGGAGTCGA 1353 Query 182 CGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCT 241 ||||||||||||||||| || |||||| | ||| | || |||||||||||||| Sbjct 1354 GGTAATGATTAATAGGGACAGACGGGGGCATTCGTACTGCGACGTTAGAGGTGAAATTCT 1413 Query 242 T 242 | Sbjct 1414 T 1414 >seq101806 Length=4387 Score = 125 bits (138), Expect = 1e-26 Identities = 180/246 (73%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || || ||||||| ||||||||||||| |||||| |||| || ||||| |||||||| Sbjct 3897 CTGTTGCTTTGAAGAAATTAGAGTGTTTAAAGCAAGCCTACATTCTGAATATATTAGCAT 3838 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | ||| | | | | | ||||||||| | | | | | |||||||| Sbjct 3837 GGGATAACATCATATAATTTTAG-TCATGTTTTGTTGGCCTTTGGTATCAAAGTAATGAT 3779 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 | | ||| |||||||| ||| |||| || || |||||| |||||||||||| ||| Sbjct 3778 TGACAGGCC-AGTCGGGGCATTCA-TATTGCATAGT-AGAGGTAAAATTCTTGGATGTAT 3722 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||| | ||| | || || ||||||||||||||| || ||| |||| Sbjct 3721 GTAAGACGAACAACTTCTAAATCATTTGCCTTGGATGTTTTCATTAAGCA-AGAATGAAA 3663 Query 311 GTTAGG 316 ||| || Sbjct 3662 GTTGGG 3657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914121693056