Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq58431 136 2e-29 seq56964 136 2e-29 seq105477 89.7 2e-15 >seq58431 Length=886 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| || |||| ||| Sbjct 620 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGAACGAAGTCAGG 561 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| ||| |||| ||||| ||||||||||||||||| | ||||| Sbjct 560 GGAAACCCTGATGGAGGTTCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 501 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 500 ATAGGGGCGA 491 Score = 80.6 bits (88), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 3/83 (4%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG--TGTCAAA 465 ||||||||| |||||||||||||||||||||||| | |||||| ||||| ||| ||| Sbjct 817 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATTGGGAATGT-AAA 759 Query 466 CCCGTGCGCGTAATGAAAGTGAA 488 ||| ||||||||||||| || Sbjct 758 CCCAAAGGCGTAATGAAAGTAAA 736 >seq56964 Length=746 Score = 136 bits (150), Expect = 2e-29 Identities = 118/144 (82%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| |||||| |||||| | || || |||||| | | ||||| ||||||| Sbjct 445 GAGTCGGGTTGCTTGGGAGTGCAGCCCAAATCAGGTGGTAAACTCCATCTAAGGCTAAAT 386 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 385 AT-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 327 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||||||||| |||||||| Sbjct 326 GAGAGAGTTAAAAAGTACGTGAAA 303 >seq105477 Length=1228 Score = 89.7 bits (98), Expect = 2e-15 Identities = 75/91 (82%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| || ||| | |||||||| | || || || Sbjct 1139 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCT-AATCAGCGGTAAATTCCGTCCAAGGC 1197 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAA 125 |||||| ||| ||||||||||||| |||| Sbjct 1198 TAAATACGGGCGAGAGACCGATAGCAAACAA 1228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2077472718100