Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq68810 125 2e-26 seq79437 98.7 3e-18 >seq68810 Length=6058 Score = 125 bits (138), Expect = 2e-26 Identities = 92/107 (86%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| || ||| |||||||||||||||||||| ||| ||||||||| |||||||||| Sbjct 5842 TACGTTCGAAAGAATGAAACTCAAAGGAATTGACAGGGGCCCGCACAAATGGTGGAGCAT 5901 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||||||||||| |||| ||||||||||||||| |||||||| Sbjct 5902 GTGGTTTAATTCGATGCAAAACGAAGAACCTTACCAGGGCTTGACAT 5948 >seq79437 Length=18409 Score = 98.7 bits (108), Expect = 3e-18 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||||||| ||| | | || |||||||||||||||| |||| Sbjct 11080 ACAGGTGGTGCATGGCTGTCGTCAGCTTGTGCCATAAGGTGTTGGGTTAAGTCCCACAAC 11021 Query 216 GAGCGCAACCCTTAAGCTTAGT 237 ||||||||||||| | ||||| Sbjct 11020 GAGCGCAACCCTTGTGTTTAGT 10999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1502227957120