Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06]
117,822 sequences; 199,627,509 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq26775 242 6e-62
seq92133 179 6e-43
seq71309 131 3e-28
seq101806 82.4 1e-13
>seq26775
Length=432
Score = 242 bits (268), Expect = 6e-62
Identities = 205/249 (82%), Gaps = 5/249 (2%)
Strand=Plus/Minus
Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 255 CCTTCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 196
Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG 132
|||| || | |||| | ||| ||||||||||||||| | | ||| |
Sbjct 195 -TCAATCT-CGTGCGGCTAAACGCCGCCCGTCCCTCTAAGAAGCTGCATAGGACCCACAA 138
Query 133 TCGATGG---GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189
||| | ||| |||| ||| | |||||||||||||||||||||||||||||||
Sbjct 137 GGGATCCTACGTCTAGTTAGTAGGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 78
Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 77 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTCT 18
Query 250 CAATCTGTC 258
|||||||||
Sbjct 17 CAATCTGTC 9
>seq92133
Length=1215
Score = 179 bits (198), Expect = 6e-43
Identities = 160/197 (81%), Gaps = 5/197 (3%)
Strand=Plus/Plus
Query 65 GTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAGCCA 122
||||||||||||||||||| | | || |||| | |||||||||||||||||| |||
Sbjct 974 GTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGGCCG 1031
Query 123 CCAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181
| | | | || |||| |||||||| | ||||||||||||||| | |||||||
Sbjct 1032 CGGAGGAGACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACCGAATTAA 1091
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
|||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1092 CCAGACAAATTGTTCCACCAACTAAGAATGGCCATGCACCACCACCCACAGAATCAAGAA 1151
Query 242 AGAGCTATCAATCTGTC 258
|||||| || ||||||
Sbjct 1152 AGAGCTCTCTGTCTGTC 1168
>seq71309
Length=8839
Score = 131 bits (144), Expect = 3e-28
Identities = 89/100 (89%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||| ||| ||| || ||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 8010 GTCTCTTTCATTAGCGAAATTAACCAGACAAATCACTCCACCAATTAAGAACGGTCATGC 7951
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|| ||| |||||||||||||||||||||| | ||| ||||
Sbjct 7950 ACTACCGCCCATAGAATCAAGAAAGAGCTCTTAATGTGTC 7911
>seq101806
Length=4387
Score = 82.4 bits (90), Expect = 1e-13
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCA 215
|||||||| ||| | | | ||||||||||||||||| ||||| || ||| ||||| ||
Sbjct 3305 AAGGTCTCATTCATGAACAAAATTAACCAGACAAATCGCTCCATCATCTACGAACGATCA 3364
Query 216 TGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255
| || ||| ||||||| ||| |||||| | || || |||
Sbjct 3365 TACATCACGACCCATAAAATGAAGAAATAACTCCCAGTCT 3404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795890531982
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |