Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq26775 242 6e-62 seq92133 179 6e-43 seq71309 131 3e-28 seq101806 82.4 1e-13 >seq26775 Length=432 Score = 242 bits (268), Expect = 6e-62 Identities = 205/249 (82%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 255 CCTTCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 196 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG 132 |||| || | |||| | ||| ||||||||||||||| | | ||| | Sbjct 195 -TCAATCT-CGTGCGGCTAAACGCCGCCCGTCCCTCTAAGAAGCTGCATAGGACCCACAA 138 Query 133 TCGATGG---GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 ||| | ||| |||| ||| | ||||||||||||||||||||||||||||||| Sbjct 137 GGGATCCTACGTCTAGTTAGTAGGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 78 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 77 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTCT 18 Query 250 CAATCTGTC 258 ||||||||| Sbjct 17 CAATCTGTC 9 >seq92133 Length=1215 Score = 179 bits (198), Expect = 6e-43 Identities = 160/197 (81%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 65 GTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAGCCA 122 ||||||||||||||||||| | | || |||| | |||||||||||||||||| ||| Sbjct 974 GTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGGCCG 1031 Query 123 CCAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 | | | | || |||| |||||||| | ||||||||||||||| | ||||||| Sbjct 1032 CGGAGGAGACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACCGAATTAA 1091 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 1092 CCAGACAAATTGTTCCACCAACTAAGAATGGCCATGCACCACCACCCACAGAATCAAGAA 1151 Query 242 AGAGCTATCAATCTGTC 258 |||||| || |||||| Sbjct 1152 AGAGCTCTCTGTCTGTC 1168 >seq71309 Length=8839 Score = 131 bits (144), Expect = 3e-28 Identities = 89/100 (89%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||| ||| || ||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 8010 GTCTCTTTCATTAGCGAAATTAACCAGACAAATCACTCCACCAATTAAGAACGGTCATGC 7951 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||| |||||||||||||||||||||| | ||| |||| Sbjct 7950 ACTACCGCCCATAGAATCAAGAAAGAGCTCTTAATGTGTC 7911 >seq101806 Length=4387 Score = 82.4 bits (90), Expect = 1e-13 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCA 215 |||||||| ||| | | | ||||||||||||||||| ||||| || ||| ||||| || Sbjct 3305 AAGGTCTCATTCATGAACAAAATTAACCAGACAAATCGCTCCATCATCTACGAACGATCA 3364 Query 216 TGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 | || ||| ||||||| ||| |||||| | || || ||| Sbjct 3365 TACATCACGACCCATAAAATGAAGAAATAACTCCCAGTCT 3404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795890531982