Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06]
117,822 sequences; 199,627,509 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq86039 351 2e-94
seq85459 302 8e-80
seq45513 134 2e-29
seq70022 116 6e-24
seq67805 82.4 1e-13
>seq86039
Length=1031
Score = 351 bits (388), Expect = 2e-94
Identities = 255/293 (87%), Gaps = 2/293 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | | || |||||||||||||||| ||||| |||||||
Sbjct 395 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAT-CTAACATGTCTCA 452
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||| |||||||||| ||||||||| |||||||||||||| ||| ||| ||
Sbjct 453 CGACGGTCTAATCCCAGCTCACATTCCCTATTGGTGGGTGAACAATCGAACACTTGGTGA 512
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 572
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
Sbjct 573 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTAAGGTAACTTTTCTGACACCTCTAGCTT 632
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
||||| | | || ||||||||||||||||||| |||||| || ||||||
Sbjct 633 TAAATTCCAAAGGTCTAAAGGATCGATAGGCCATGCTTTCACTATTCGTATTC 685
>seq85459
Length=1382
Score = 302 bits (334), Expect = 8e-80
Identities = 196/214 (92%), Gaps = 1/214 (0%)
Strand=Plus/Minus
Query 10 GAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69
||||||| |||| | | || ||||||||||||||||||||||||||||||| ||||||||
Sbjct 213 GAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCT 155
Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129
|||||||||||| |||||||||| |||||||||||||||||| ||| |||||||||||
Sbjct 154 AAACCCAGCTCATGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTT 95
Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189
| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 94 CACAATGGTAGGAAGAGCTGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 35
Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223
||||||| ||||||||||||||||||||||||||
Sbjct 34 GCTGCCATAAGCCAGTTATCCCTGTGGTAACTTT 1
>seq45513
Length=302
Score = 134 bits (148), Expect = 2e-29
Identities = 74/74 (100%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 60
Query 195 CACAAGCCAGTTAT 208
||||||||||||||
Sbjct 61 CACAAGCCAGTTAT 74
>seq70022
Length=4677
Score = 116 bits (128), Expect = 6e-24
Identities = 84/97 (87%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 198 AAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTA 257
||||||||||||||| |||||||||||||| |||||||||| | ||||| | | || |||
Sbjct 4015 AAGCCAGTTATCCCTATGGTAACTTTTCTGACACCTCTAGCTTTAAATTCCAACGGTCTA 4074
Query 258 AAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
||||||||||| ||||| |||| | |||| |||||||
Sbjct 4075 AAGGATCGATATGCCACGCTTTTACGGTTCGTATTCA 4111
>seq67805
Length=2140
Score = 82.4 bits (90), Expect = 1e-13
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | | || |||||||||||||||||||||||||||||||
Sbjct 7 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 65
Query 61 TGACGGTCTA 70
|||||||||
Sbjct 66 CGACGGTCTA 75
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 853393328832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |