Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq86039 351 2e-94 seq85459 302 8e-80 seq45513 134 2e-29 seq70022 116 6e-24 seq67805 82.4 1e-13 >seq86039 Length=1031 Score = 351 bits (388), Expect = 2e-94 Identities = 255/293 (87%), Gaps = 2/293 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || |||||||||||||||| ||||| ||||||| Sbjct 395 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAT-CTAACATGTCTCA 452 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||| |||||||||| ||||||||| |||||||||||||| ||| ||| || Sbjct 453 CGACGGTCTAATCCCAGCTCACATTCCCTATTGGTGGGTGAACAATCGAACACTTGGTGA 512 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 513 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 572 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | Sbjct 573 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTAAGGTAACTTTTCTGACACCTCTAGCTT 632 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||| | | || ||||||||||||||||||| |||||| || |||||| Sbjct 633 TAAATTCCAAAGGTCTAAAGGATCGATAGGCCATGCTTTCACTATTCGTATTC 685 >seq85459 Length=1382 Score = 302 bits (334), Expect = 8e-80 Identities = 196/214 (92%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 10 GAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 ||||||| |||| | | || ||||||||||||||||||||||||||||||| |||||||| Sbjct 213 GAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCT 155 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 |||||||||||| |||||||||| |||||||||||||||||| ||| ||||||||||| Sbjct 154 AAACCCAGCTCATGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTT 95 Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189 | ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 94 CACAATGGTAGGAAGAGCTGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 35 Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 ||||||| |||||||||||||||||||||||||| Sbjct 34 GCTGCCATAAGCCAGTTATCCCTGTGGTAACTTT 1 >seq45513 Length=302 Score = 134 bits (148), Expect = 2e-29 Identities = 74/74 (100%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 60 Query 195 CACAAGCCAGTTAT 208 |||||||||||||| Sbjct 61 CACAAGCCAGTTAT 74 >seq70022 Length=4677 Score = 116 bits (128), Expect = 6e-24 Identities = 84/97 (87%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 198 AAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTA 257 ||||||||||||||| |||||||||||||| |||||||||| | ||||| | | || ||| Sbjct 4015 AAGCCAGTTATCCCTATGGTAACTTTTCTGACACCTCTAGCTTTAAATTCCAACGGTCTA 4074 Query 258 AAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||||||| ||||| |||| | |||| ||||||| Sbjct 4075 AAGGATCGATATGCCACGCTTTTACGGTTCGTATTCA 4111 >seq67805 Length=2140 Score = 82.4 bits (90), Expect = 1e-13 Identities = 61/70 (87%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 7 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 65 Query 61 TGACGGTCTA 70 ||||||||| Sbjct 66 CGACGGTCTA 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853393328832