Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq49367 104 5e-20 seq102131 100 7e-19 seq742 84.2 5e-14 >seq49367 Length=4146 Score = 104 bits (114), Expect = 5e-20 Identities = 95/119 (80%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||| ||||||| ||| |||||||||| | ||| | |||| | | || || || Sbjct 129 CCACACCTTCGGCAGATCGCTTAAGCCCCTTT-CATCTTAGGCGTAAGAGCGCTCGATCA 71 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 |||||||||||| ||||||||||||| |||||||||| | || |||||||||| ||||| Sbjct 70 GTGAGCTATTACACACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCT 12 >seq102131 Length=2345 Score = 100 bits (110), Expect = 7e-19 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||| |||||||| ||| | || ||||| | ||| || ||||| | | || ||| | Sbjct 1177 CCATAGCTTCGGTAGATCGCATA-GCCCCATT-CATCATTGGCGCAAGAGCGCTCGACAA 1234 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||| ||||||||||||| ||||| ||| | || ||||||||||||||||| Sbjct 1235 ATGAGCTATTACACACTCTTTCAAGGGTGGCTACTTTTACGCAAACCTCCTGGTTGTCTA 1294 Query 327 CGCAACTCCACATCCTTTCCCACTGAG 353 ||| | | || || ||| ||||||| Sbjct 1295 TGCACCCCTACCTCTTTTATCACTGAG 1321 >seq742 Length=6998 Score = 84.2 bits (92), Expect = 5e-14 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 262 GACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321 || |||||||||||||| ||||||||||||| |||||||||| | || |||||||||| | Sbjct 6998 GATCAGTGAGCTATTACACACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCT 6939 Query 322 GTCT 325 |||| Sbjct 6938 GTCT 6935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176212528128