Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06]
117,822 sequences; 199,627,509 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq49367 104 5e-20
seq102131 100 7e-19
seq742 84.2 5e-14
>seq49367
Length=4146
Score = 104 bits (114), Expect = 5e-20
Identities = 95/119 (80%), Gaps = 1/119 (1%)
Strand=Plus/Minus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
||||| ||||||| ||| |||||||||| | ||| | |||| | | || || ||
Sbjct 129 CCACACCTTCGGCAGATCGCTTAAGCCCCTTT-CATCTTAGGCGTAAGAGCGCTCGATCA 71
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325
|||||||||||| ||||||||||||| |||||||||| | || |||||||||| |||||
Sbjct 70 GTGAGCTATTACACACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCT 12
>seq102131
Length=2345
Score = 100 bits (110), Expect = 7e-19
Identities = 112/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
||| |||||||| ||| | || ||||| | ||| || ||||| | | || ||| |
Sbjct 1177 CCATAGCTTCGGTAGATCGCATA-GCCCCATT-CATCATTGGCGCAAGAGCGCTCGACAA 1234
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
||||||||||| ||||||||||||| ||||| ||| | || |||||||||||||||||
Sbjct 1235 ATGAGCTATTACACACTCTTTCAAGGGTGGCTACTTTTACGCAAACCTCCTGGTTGTCTA 1294
Query 327 CGCAACTCCACATCCTTTCCCACTGAG 353
||| | | || || ||| |||||||
Sbjct 1295 TGCACCCCTACCTCTTTTATCACTGAG 1321
>seq742
Length=6998
Score = 84.2 bits (92), Expect = 5e-14
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 262 GACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321
|| |||||||||||||| ||||||||||||| |||||||||| | || |||||||||| |
Sbjct 6998 GATCAGTGAGCTATTACACACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCT 6939
Query 322 GTCT 325
||||
Sbjct 6938 GTCT 6935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1176212528128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |