Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq96547 104 2e-20 seq56214 95.1 1e-17 >seq96547 Length=10798 Score = 104 bits (114), Expect = 2e-20 Identities = 134/181 (74%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || ||| |||||| ||||||||| ||||| |||| || | ||| | |||||||| ||| Sbjct 622 CTATTAGTTTGAAGAAATTAGAGTGTTCAGAGCAAGCTTACCCTCTGGATACATTAGCAT 563 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | ||||| | | |||| |||| || || | ||| || ||||||| Sbjct 562 GGGATAACATCATAGG-CTTTCGGTCATATTGCGTTGGCCTTCGGGATCGGA-GTAATGA 505 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| | |||||||||||||||||| Sbjct 504 TTAACAAGGACAGTCGGGGGCATTTGTATTTCATAGTCAGAAGTGAAATTCTTGGATTTA 445 Query 190 T 190 | Sbjct 444 T 444 >seq56214 Length=1414 Score = 95.1 bits (104), Expect = 1e-17 Identities = 132/180 (73%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CT-TTGCTCGAATACA 62 |||| || ||||||||||||||||| ||| | ||||||||||| || || ||| | Sbjct 1237 CCAGCACGTTTACTTTGAAAAAATTGGAGTGCTCAAAGCAGGCGCTACAGCCTGAACATT 1296 Query 63 TTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC 122 | ||||||||||| |||||||| | ||||||||||| || || || | ||| Sbjct 1297 TGTGCATGGAATAATGGAATAGGATCT-CGGTTCTATTTCGTTGGCTT-TCGGAGTCGAG 1354 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 |||||||| |||| ||| || |||||| | ||| | || | ||||||||||||| Sbjct 1355 GTAATGATTAATAGGGACAGACGGGGGCATTCGTACTGCGACGTTAGAGGTGAAATTCTT 1414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511415602880