Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq105005 118 2e-24 seq4644 77.0 5e-12 >seq105005 Length=2442 Score = 118 bits (130), Expect = 2e-24 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207 |||||||| || ||| ||||||||||||||| |||||||||||||| ||||| ||| | Sbjct 1886 ACGCCCACATCGAATATGGACCGAACTGTCTCACGACGTTCTGAACCTAGCTCACGTACT 1827 Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGC 267 |||||||| ||| || || ||||||||| || ||| || ||||| | | || |||| Sbjct 1826 ACTTTAATGAACGAGCAACCAAACCCTTGGAACATACCACAACCCCAAGTGGCGAAGAGC 1767 Query 268 CGACATCG 275 |||||||| Sbjct 1766 CGACATCG 1759 >seq4644 Length=1446 Score = 77.0 bits (84), Expect = 5e-12 Identities = 61/71 (86%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 183 ACGTTCTGAA-CCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||||| ||| |||| ||| || |||||||||||||||||||| | |||||| || Sbjct 1397 ACGTTCTGAAACCCCGCTCACGTACCGCTTTAATGGGCGAACAGCCCGA-CCTTGGAACA 1339 Query 242 TACTTCAGCCC 252 |||| |||||| Sbjct 1338 TACTACAGCCC 1328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 779908794392