Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq810 237 5e-60 >seq810 Length=5265 Score = 237 bits (262), Expect = 5e-60 Identities = 223/282 (79%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 |||||| ||||| |||||| ||| |||||||||| | ||| |||||||| |||||||||| Sbjct 2757 GAGAGGATGATCAGCCACACTGGGACTGAGACACTGCCCAGACTCCTACAGGAGGCAGCA 2698 Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAG 341 ||||||||| || | |||||||||||||||| | | ||||| |||||||| | |||| Sbjct 2697 GTGGGGAATTTTCCGCAATGGGCAAAAGCCTAACGGAGCAATGCCGCGTGTAGGTAGAAG 2638 Query 342 GCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAA 399 |||| || ||| | || ||| | | ||| ||||| ||||||| ||| || ||| || Sbjct 2637 GCCTACGAGTCATGAACTTCTTTTCCCAAAGAAGAAGTAATGACTGTATATGGGGAATAA 2578 Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGA 459 || ||||||||| |||| ||||||||||||||||| ||| || ||||||||||||| Sbjct 2577 GCATCGGCTAACTTTGTGCTAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGA 2518 Query 460 ATTA-CTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | | | ||||||||| || |||||||| || ||||||| Sbjct 2517 ACGAGATTGGGCGTAAAACGTATGTAGGTGGCTTTTTAAGTC 2476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1495835497728