Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06]
117,822 sequences; 199,627,509 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq70022 430 4e-118
seq86039 297 6e-78
seq98740 277 6e-72
seq56963 187 8e-45
seq82762 185 3e-44
seq19442 174 5e-41
seq64102 147 7e-33
seq23826 141 3e-31
seq82666 129 2e-27
seq111308 113 1e-22
>seq70022
Length=4677
Score = 430 bits (476), Expect = 4e-118
Identities = 359/431 (83%), Gaps = 9/431 (2%)
Strand=Plus/Plus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67
||||| || ||| ||||||||||||||| |||| | |||||||||| | ||||||
Sbjct 4146 TTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACTTCCGTTATCT 4205
Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127
||||| ||||||| |||| ||||||||||||||||||||||||||| || | ||||||
Sbjct 4206 TTTAATAGATGTGTCGCCTCAGCCAAACTCCCCACCTGACAATGTCTTCCGCTCGGATCA 4265
Query 128 GCCCGC-GAAG-GACCTTAACG-CCAGAAA-ATGGTCGGTGAAGACCAGT-TCCGCTTCA 182
|| ||| |||| || || | ||| ||| | || | ||| || | |||| ||||
Sbjct 4266 GCTCGCCGAAGCGAGCTGTGGGTCCAAAAAGAGGGGCAGTGC---CCTGCCTCCGATTCA 4322
Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242
| || ||||||||| |||| ||| ||||||||||||||||||||||| | | | ||||
Sbjct 4323 TGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGTGA-GACACCCA 4381
Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302
||||| ||||||||||||||||||||||||||||| ||||||||| ||| |||| || ||
Sbjct 4382 CTTATACTACACCTCTCAAGTCATTTCACAAAGTCAGACTAGAGTTAAGTTCAATAGAGT 4441
Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362
||||||||||||||||||| | || ||| |||||||||||||| ||||||| |||||||
Sbjct 4442 CTTCTTTCCCCGCTGATTCTGTCATACCCATTCCCTTGGCTGTGATTTCGCTGGATAGTA 4501
Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422
|| ||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 4502 GACAGGGACAATGGGAATCTGGTTAATCCATTCATGCGTGTCACTAATTAGATGACGAGG 4561
Query 423 CATTTGGCTAC 433
|||||| ||||
Sbjct 4562 CATTTGACTAC 4572
>seq86039
Length=1031
Score = 297 bits (328), Expect = 6e-78
Identities = 258/316 (82%), Gaps = 7/316 (2%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||||||||||| |||| | |||||||||| ||||||||
Sbjct 719 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACGTGCGTTATC 778
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||| |||||||||||| |||||||||||||||||| | ||||||||
Sbjct 779 TTTTAACAGATGTGTTGCCCCAGCCAAATTCCCCACCTGACAATGTCTTACGCCCGGATC 838
Query 127 GGCCCGC---GAAGGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182
|||||| |||| | ||| ||| ||| | || | ||| || |||| ||||
Sbjct 839 AGCCCGCCGAAAAGGGCTTTAGGTCCAAAAAGAGGGGCAGTG--CCCCGCCTCCGATTCA 896
Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242
|| ||||||||| |||| ||| || |||||||||||||| ||| | | ||||||||
Sbjct 897 CGGAATAAGTAAAATAACGTTAAAAGTTGTGGTATTTCACTTACGCAGTGA-GGCTCCCA 955
Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 956 ATTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTAAACAGGGT 1015
Query 303 CTTCTTTCCCCGCTGA 318
||||||||||||||||
Sbjct 1016 CTTCTTTCCCCGCTGA 1031
>seq98740
Length=763
Score = 277 bits (306), Expect = 6e-72
Identities = 234/283 (83%), Gaps = 5/283 (2%)
Strand=Plus/Plus
Query 98 CCCACCTGACAATGTCATCAACCCGGATCGGCCCGC-GAAG--GACCTTAACGCCAGAAA 154
|| ||||||||||||| || |||||||| |||||| |||| | | || ||| |||
Sbjct 1 CCTACCTGACAATGTCTTCCGCCCGGATCAGCCCGCCGAAGCGGGCTTTGGGTCCAAAAA 60
Query 155 -ATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTG 213
| || | ||| || | | |||| || ||||||||| ||| ||| ||| ||
Sbjct 61 GAGGGGCAGTGCCCCCCGCCTTTGATTCACGGAATAAGTAAAATAACATTAAAAGTAATG 120
Query 214 GTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAA 273
||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 121 GTATTTCACTTGCGCCGTGA-GGCTCCCACTTATACTACACCTCTCAAGTCATTTCACAA 179
Query 274 AGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGT 333
|||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| ||
Sbjct 180 AGTCGGACTACAGTCAAGCTCAACAGGGTCTTCTTTCCCCGATGATTCTGCCAAGCCTGT 239
Query 334 TCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGG 376
||||||||||||||||||||| ||||||||| ||||| |||||
Sbjct 240 TCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGATAGTGG 282
>seq56963
Length=11808
Score = 187 bits (206), Expect = 8e-45
Identities = 130/148 (88%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447
|| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 2314 ATTCATTCATGCGCGTCACTAACTAGATGACGAGACATTTGAATACCTTAAGAGAGTCAT 2373
Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507
| ||||||| | ||||||||||| |||||||||| |||||||||||| ||| ||||||
Sbjct 2374 AACTACTCCCTCTGTTTACCCGCGTTTGGTTGAATATCTTCACTTTGATATTGAGAGCAT 2433
Query 508 TGGGCAGAAATCACATTGCGTCAACATC 535
|||| |||||||||||| | | ||||||
Sbjct 2434 TGGGTAGAAATCACATTACATTAACATC 2461
>seq82762
Length=1312
Score = 185 bits (204), Expect = 3e-44
Identities = 172/214 (80%), Gaps = 7/214 (3%)
Strand=Plus/Plus
Query 76 ATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGA 135
||||||||||||||||||| ||||||| |||||||||| || | |||||| |||||| |
Sbjct 390 ATGTGCCGCCCCAGCCAAAGTCCCCACTTGACAATGTCTTCCGCTCGGATCAGCCCGCCA 449
Query 136 A---GGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAG 191
| || | || ||| ||| | || | ||| || |||| || | || ||||
Sbjct 450 AAGCGGGCTTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTTACGGAATAAG 507
Query 192 TaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTA 251
||||| |||| ||| ||||||||||||||||||||||| | ||||||||||||| |||
Sbjct 508 TAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGTGA-GGCTCCCACTTATACTA 566
Query 252 CACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285
||||||||||||||||||||||||||||||||||
Sbjct 567 CACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 600
>seq19442
Length=548
Score = 174 bits (192), Expect = 5e-41
Identities = 148/180 (82%), Gaps = 3/180 (2%)
Strand=Plus/Plus
Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAA 233
|||| ||| || ||||| | |||||| | |||||||||||||| || |||||
Sbjct 371 CCGCCTCACCGAGTAAGTGAGGAAACGACGGGAGTAGTGGTATTTCAAAGTCGACCGAA- 429
Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293
| ||||||||||| ||||||||||| ||| |||||||| | |||||||||||||||
Sbjct 430 -GTCTCCCACTTATGCTACACCTCTCGTGTCTCCTCACAAAGCCAGACTAGAGTCAAGCT 488
Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 489 CAACAGGGTCTTCTTTCCCCGCCGATGGGCCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 548
Score = 109 bits (120), Expect = 2e-21
Identities = 90/110 (82%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| ||| ||||||| ||| |||| ||||||||||||||||||||
Sbjct 115 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATC 174
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116
||| |||||||| ||||||||| |||||||||| |||| | |||| ||
Sbjct 175 ATTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCGGTGTCCTC 224
>seq64102
Length=869
Score = 147 bits (162), Expect = 7e-33
Identities = 97/106 (92%), Gaps = 1/106 (1%)
Strand=Plus/Plus
Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489
|||||||||||||||||||||||||| || |||| || |||||| ||||||||||||||
Sbjct 133 CTACCTTAAGAGAGTCATAGTTACTCTCGTTGTTTTCC-GCGCTTAGTTGAATTTCTTCA 191
Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 192 TTTTGACATTCAGAGCACTGGGTAGAAATCACATTGCGTTAACATC 237
>seq23826
Length=471
Score = 141 bits (156), Expect = 3e-31
Identities = 84/88 (95%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 173 AGTTACTCCCGCTGTTTACCCGCGCGTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 114
Query 508 TGGGCAGAAATCACATTGCGTCAACATC 535
||||||||||||||||||| | ||||||
Sbjct 113 TGGGCAGAAATCACATTGCATTAACATC 86
>seq82666
Length=16643
Score = 129 bits (142), Expect = 2e-27
Identities = 109/136 (80%), Gaps = 11/136 (8%)
Strand=Plus/Minus
Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA-------- 452
||||||||||||||||||||||||||| | || ||||||| | || || |||
Sbjct 1734 CGTCACTAATTAGATGACGAGGCATTTAGATATCTTAAGATAATCTTAATTAGTTAATTA 1675
Query 453 ---CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509
|||||| ||||||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct 1674 TTACTCCCGTTGTTTACCCGCGTTTGGTTGAATTTCTTCACTTTGACAATTAGAGCACTG 1615
Query 510 GGCAGAAATCACATTG 525
| |||||| |||||
Sbjct 1614 AGTAGAAATTGCATTG 1599
>seq111308
Length=300
Score = 113 bits (124), Expect = 1e-22
Identities = 78/87 (90%), Gaps = 1/87 (1%)
Strand=Plus/Minus
Query 194 aaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACA 253
||| |||| ||| ||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct 171 AAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGTGA-GGCTCCCACTTATACTACA 113
Query 254 CCTCTCAAGTCATTTCACAAAGTCGGA 280
||||||||||||||||||||||| |||
Sbjct 112 CCTCTCAAGTCATTTCACAAAGTTGGA 86
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1633273374656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |