Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq70022 430 4e-118 seq86039 297 6e-78 seq98740 277 6e-72 seq56963 187 8e-45 seq82762 185 3e-44 seq19442 174 5e-41 seq64102 147 7e-33 seq23826 141 3e-31 seq82666 129 2e-27 seq111308 113 1e-22 >seq70022 Length=4677 Score = 430 bits (476), Expect = 4e-118 Identities = 359/431 (83%), Gaps = 9/431 (2%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||| || ||| ||||||||||||||| |||| | |||||||||| | |||||| Sbjct 4146 TTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACTTCCGTTATCT 4205 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 ||||| ||||||| |||| ||||||||||||||||||||||||||| || | |||||| Sbjct 4206 TTTAATAGATGTGTCGCCTCAGCCAAACTCCCCACCTGACAATGTCTTCCGCTCGGATCA 4265 Query 128 GCCCGC-GAAG-GACCTTAACG-CCAGAAA-ATGGTCGGTGAAGACCAGT-TCCGCTTCA 182 || ||| |||| || || | ||| ||| | || | ||| || | |||| |||| Sbjct 4266 GCTCGCCGAAGCGAGCTGTGGGTCCAAAAAGAGGGGCAGTGC---CCTGCCTCCGATTCA 4322 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 | || ||||||||| |||| ||| ||||||||||||||||||||||| | | | |||| Sbjct 4323 TGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGTGA-GACACCCA 4381 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||| ||||||||||||||||||||||||||||| ||||||||| ||| |||| || || Sbjct 4382 CTTATACTACACCTCTCAAGTCATTTCACAAAGTCAGACTAGAGTTAAGTTCAATAGAGT 4441 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||||||| | || ||| |||||||||||||| ||||||| ||||||| Sbjct 4442 CTTCTTTCCCCGCTGATTCTGTCATACCCATTCCCTTGGCTGTGATTTCGCTGGATAGTA 4501 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 || ||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 4502 GACAGGGACAATGGGAATCTGGTTAATCCATTCATGCGTGTCACTAATTAGATGACGAGG 4561 Query 423 CATTTGGCTAC 433 |||||| |||| Sbjct 4562 CATTTGACTAC 4572 >seq86039 Length=1031 Score = 297 bits (328), Expect = 6e-78 Identities = 258/316 (82%), Gaps = 7/316 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | |||||||||| |||||||| Sbjct 719 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACGTGCGTTATC 778 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||| |||||||||||| |||||||||||||||||| | |||||||| Sbjct 779 TTTTAACAGATGTGTTGCCCCAGCCAAATTCCCCACCTGACAATGTCTTACGCCCGGATC 838 Query 127 GGCCCGC---GAAGGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182 |||||| |||| | ||| ||| ||| | || | ||| || |||| |||| Sbjct 839 AGCCCGCCGAAAAGGGCTTTAGGTCCAAAAAGAGGGGCAGTG--CCCCGCCTCCGATTCA 896 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 || ||||||||| |||| ||| || |||||||||||||| ||| | | |||||||| Sbjct 897 CGGAATAAGTAAAATAACGTTAAAAGTTGTGGTATTTCACTTACGCAGTGA-GGCTCCCA 955 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 956 ATTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTAAACAGGGT 1015 Query 303 CTTCTTTCCCCGCTGA 318 |||||||||||||||| Sbjct 1016 CTTCTTTCCCCGCTGA 1031 >seq98740 Length=763 Score = 277 bits (306), Expect = 6e-72 Identities = 234/283 (83%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 98 CCCACCTGACAATGTCATCAACCCGGATCGGCCCGC-GAAG--GACCTTAACGCCAGAAA 154 || ||||||||||||| || |||||||| |||||| |||| | | || ||| ||| Sbjct 1 CCTACCTGACAATGTCTTCCGCCCGGATCAGCCCGCCGAAGCGGGCTTTGGGTCCAAAAA 60 Query 155 -ATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTG 213 | || | ||| || | | |||| || ||||||||| ||| ||| ||| || Sbjct 61 GAGGGGCAGTGCCCCCCGCCTTTGATTCACGGAATAAGTAAAATAACATTAAAAGTAATG 120 Query 214 GTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAA 273 ||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| Sbjct 121 GTATTTCACTTGCGCCGTGA-GGCTCCCACTTATACTACACCTCTCAAGTCATTTCACAA 179 Query 274 AGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGT 333 |||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| || Sbjct 180 AGTCGGACTACAGTCAAGCTCAACAGGGTCTTCTTTCCCCGATGATTCTGCCAAGCCTGT 239 Query 334 TCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGG 376 ||||||||||||||||||||| ||||||||| ||||| ||||| Sbjct 240 TCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGATAGTGG 282 >seq56963 Length=11808 Score = 187 bits (206), Expect = 8e-45 Identities = 130/148 (88%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 || ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||| Sbjct 2314 ATTCATTCATGCGCGTCACTAACTAGATGACGAGACATTTGAATACCTTAAGAGAGTCAT 2373 Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507 | ||||||| | ||||||||||| |||||||||| |||||||||||| ||| |||||| Sbjct 2374 AACTACTCCCTCTGTTTACCCGCGTTTGGTTGAATATCTTCACTTTGATATTGAGAGCAT 2433 Query 508 TGGGCAGAAATCACATTGCGTCAACATC 535 |||| |||||||||||| | | |||||| Sbjct 2434 TGGGTAGAAATCACATTACATTAACATC 2461 >seq82762 Length=1312 Score = 185 bits (204), Expect = 3e-44 Identities = 172/214 (80%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 76 ATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGA 135 ||||||||||||||||||| ||||||| |||||||||| || | |||||| |||||| | Sbjct 390 ATGTGCCGCCCCAGCCAAAGTCCCCACTTGACAATGTCTTCCGCTCGGATCAGCCCGCCA 449 Query 136 A---GGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAG 191 | || | || ||| ||| | || | ||| || |||| || | || |||| Sbjct 450 AAGCGGGCTTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTTACGGAATAAG 507 Query 192 TaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTA 251 ||||| |||| ||| ||||||||||||||||||||||| | ||||||||||||| ||| Sbjct 508 TAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGTGA-GGCTCCCACTTATACTA 566 Query 252 CACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285 |||||||||||||||||||||||||||||||||| Sbjct 567 CACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 600 >seq19442 Length=548 Score = 174 bits (192), Expect = 5e-41 Identities = 148/180 (82%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAA 233 |||| ||| || ||||| | |||||| | |||||||||||||| || ||||| Sbjct 371 CCGCCTCACCGAGTAAGTGAGGAAACGACGGGAGTAGTGGTATTTCAAAGTCGACCGAA- 429 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 | ||||||||||| ||||||||||| ||| |||||||| | ||||||||||||||| Sbjct 430 -GTCTCCCACTTATGCTACACCTCTCGTGTCTCCTCACAAAGCCAGACTAGAGTCAAGCT 488 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 489 CAACAGGGTCTTCTTTCCCCGCCGATGGGCCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 548 Score = 109 bits (120), Expect = 2e-21 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| |||||||||||||||||||| Sbjct 115 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATC 174 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||| |||||||| ||||||||| |||||||||| |||| | |||| || Sbjct 175 ATTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCGGTGTCCTC 224 >seq64102 Length=869 Score = 147 bits (162), Expect = 7e-33 Identities = 97/106 (92%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 |||||||||||||||||||||||||| || |||| || |||||| |||||||||||||| Sbjct 133 CTACCTTAAGAGAGTCATAGTTACTCTCGTTGTTTTCC-GCGCTTAGTTGAATTTCTTCA 191 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 192 TTTTGACATTCAGAGCACTGGGTAGAAATCACATTGCGTTAACATC 237 >seq23826 Length=471 Score = 141 bits (156), Expect = 3e-31 Identities = 84/88 (95%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507 |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 173 AGTTACTCCCGCTGTTTACCCGCGCGTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 114 Query 508 TGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||| | |||||| Sbjct 113 TGGGCAGAAATCACATTGCATTAACATC 86 >seq82666 Length=16643 Score = 129 bits (142), Expect = 2e-27 Identities = 109/136 (80%), Gaps = 11/136 (8%) Strand=Plus/Minus Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA-------- 452 ||||||||||||||||||||||||||| | || ||||||| | || || ||| Sbjct 1734 CGTCACTAATTAGATGACGAGGCATTTAGATATCTTAAGATAATCTTAATTAGTTAATTA 1675 Query 453 ---CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509 |||||| ||||||||||| ||||||||||||||||||||||||| | ||||||||| Sbjct 1674 TTACTCCCGTTGTTTACCCGCGTTTGGTTGAATTTCTTCACTTTGACAATTAGAGCACTG 1615 Query 510 GGCAGAAATCACATTG 525 | |||||| ||||| Sbjct 1614 AGTAGAAATTGCATTG 1599 >seq111308 Length=300 Score = 113 bits (124), Expect = 1e-22 Identities = 78/87 (90%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 194 aaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACA 253 ||| |||| ||| ||||||||||||||||||||||| | ||||||||||||| ||||| Sbjct 171 AAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGTGA-GGCTCCCACTTATACTACA 113 Query 254 CCTCTCAAGTCATTTCACAAAGTCGGA 280 ||||||||||||||||||||||| ||| Sbjct 112 CCTCTCAAGTCATTTCACAAAGTTGGA 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633273374656