Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq56214 497 3e-138 seq104728 232 2e-58 seq62355 136 1e-29 seq101806 113 1e-22 seq116603 100 9e-19 >seq56214 Length=1414 Score = 497 bits (550), Expect = 3e-138 Identities = 421/511 (82%), Gaps = 9/511 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTAC-AAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||| | ||| | | | ||| | ||| ||||| | ||||||||| Sbjct 1019 GTACTCATTCCGATTGCTAAGCCTCGTATGAGTTTAGCATCGTTATTTTTCGTCACTACC 960 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TCCCCGTGCTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 900 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 899 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTACCACCATGGT 840 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || |||||||||||||||||||| |||||| | ||||| || | ||||||| Sbjct 839 AGGCGCATAACCTACCATCGAAAGTTGATAAGGCAGACACTTGAAAGATACGTCGCCGGT 780 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGA---GCCCCGAAGGGCGT 296 | || ||||||||| | |||||||| || ||||||| || | ||||| || Sbjct 779 ACGAGACCATGCGATCAGCAAAGTTATTCAGAGTCACCAACGAAACGAGCCGAAACTCGA 720 Query 297 TGGTTTTTTATCTAATAAATACACCCCTTC--CGA-AGTCGGGGTTTTTAGCATGTATTA 353 | | ||| |||||||||| | ||||||| ||| || |||| | |||||||||| Sbjct 719 TTGGCTTTGATCTAATAAAAGCGCCCCTTCCACGAGGGTTGGGGCTCAGCGCATGTATTA 660 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGAT 413 |||||||||||||||| |||||||| ||||||| || | ||| || ||| ||||||||| Sbjct 659 GCTCTAGAATTACCACAGTTATCCAAGTAGTAA-GTGCGATCTAAGGAACCATAACTGAT 601 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTA 473 ||||||||||||||| |||||||| ||| | |||| |||||||||||||||||||| Sbjct 600 GTAATGAGCCATTCGCGGTTTCACTTTAT-TTTCGCTTGAACTTAGACATGCATGGCTTA 542 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| Sbjct 541 ATCTTTGAGACAAGCATATGACTACTGGCAG 511 >seq104728 Length=578 Score = 232 bits (256), Expect = 2e-58 Identities = 151/165 (92%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||||| ||| |||||||||||||||||| Sbjct 14 GTACTCATTCCAATTACTAGACTCAAA-GAGCCCGATATTGTTATTTATTGTCACTACCT 72 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 73 CCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCTTT 132 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCC 165 ||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 133 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCC 177 >seq62355 Length=2018 Score = 136 bits (150), Expect = 1e-29 Identities = 153/200 (77%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||||||||||||||| || | |||||||||| ||| | |||||||| | |||| Sbjct 1918 TTTTATCTAATAAATGCATCTCTTCCGAAGTTCAAAATTTGA---TGTATTAGTTTTAGA 1862 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG-ATAACTGATTTAATGA 420 ||||| || |||||| ||||| | ||| || ||| ||| || | ||||||||||| Sbjct 1861 ATTACTACAGTTATCTGAGTAGTG-GATACCATTAAAAAAAATTATGAATGATTTAATGA 1803 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479 | |||||||||||||| || | || || ||||||| | |||||||||||||||||| Sbjct 1802 GTCATTCGCAGTTTCATAGTCTTAATAAATTCATACTTACATATGCATGGCTTAATCTTT 1743 Query 480 GAGACAAGCATATGACTACT 499 | |||||||| | |||||| Sbjct 1742 GTAACAAGCATTTAACTACT 1723 >seq101806 Length=4387 Score = 113 bits (124), Expect = 1e-22 Identities = 141/189 (75%), Gaps = 7/189 (4%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 || |||||||||| | ||| |||| |||| | |||||| ||||| || || ||| Sbjct 4165 TACTTATTGTCACCAA-TCCTTTTGTCAGGATCGA-TAATTTCCGCGCATGTTGTTTTCA 4222 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || |||| | ||||||||||| |||||| |||| ||||| |||||||||||| | || | Sbjct 4223 TTAGATGCGCTAGCCGTTTCTTAGGCTCTCTCTATGGAATTGAACCCTAATTCGCAGTCA 4282 Query 163 CCCG----TTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 | || ||| |||| |||||| ||||| ||||| ||||||||||||| || | Sbjct 4283 CTCGTCACTTGTCACCA-CCAAGGCCATTATCCCACCATTGAAAGTTGATAGGACATGTA 4341 Query 219 TTTGAATGA 227 ||| |||| Sbjct 4342 CTTGGATGA 4350 >seq116603 Length=13016 Score = 100 bits (110), Expect = 9e-19 Identities = 115/153 (75%), Gaps = 9/153 (6%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||||| || ||| |||| || ||| ||| ||||||||||||| || Sbjct 3232 TACTCATTCGAAATACCAGACTCA-----GCCAGATATTGTTATTTATTGTCACA---TC 3283 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || |||| ||||||||||||| |||| ||||| ||||||||||| ||||||||| Sbjct 3284 CCTGTGTTACGATTGGGTAATTTA-GCGCATGCTGAATTCCTTGGATGCAATAGCCGTTT 3342 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154 |||| |||| ||| | |||| ||||| ||||| Sbjct 3343 CTCAAGCTCAGTCTTCAGAATTGAACCTTAATT 3375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508620416512