Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq53411 185 7e-42 >seq53411 Length=6979 Score = 185 bits (204), Expect = 7e-42 Identities = 579/881 (66%), Gaps = 32/881 (4%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || |||| ||| || ||| |||||||| ||||| || || || |||| Sbjct 3696 TGTTCCCGATTCAGTACCCGGAGATCTGGGAAATGTACAAGAAGGCCGAGGCGTCGTTCT 3637 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | |||||||||||| | ||||| | ||||||| || | || Sbjct 3636 GGACCGCCGAGGAGGTCGATCTCGAGCAAGACCAGCGCCACTGGGAAACCCTAACCCCCG 3577 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || | || ||||| | || || | || ||||| ||||| || ||||| |||||| Sbjct 3576 GCGAGAAGCACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCC 3517 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 |||||| | | | | ||| | ||||||| || || |||||||||||| |||| Sbjct 3516 TCGAGAATCTCGCCGGAAGGTTCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGCCTTCT 3457 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 ||||||||||||| || || ||||| ||||||| ||||||||||| | ||| |||| | Sbjct 3456 ACGGCTTCCAGATCGCGATTGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGA 3397 Query 61364 CGTACATCAGGGAGCGGGCGGAACGTGAA----CGATTGTTCAATGCCATCGAGACGATA 61419 | ||||||| || ||| || ||| || | |||| ||| |||| || || Sbjct 3396 CCTACATCAAAGACTCGGC----CGAGAAATCCCGTCTCTTCAGGGCCGTCGACACCATC 3341 Query 61420 CCGGCGGTGAAGCGGAAA--GCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA 61477 || | | ||| ||| ||| | |||||| | || |||||| | | ||| | Sbjct 3340 CC--TTGCGTCGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGG---CTCGGAGA 3286 Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537 | || | || ||| | |||| || || || || || | || ||| ||| | Sbjct 3285 CTTTCGCGGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCT 3226 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 | ||| || |||||| | || || || || || ||||| |||||||||||| || | Sbjct 3225 TCTGCGCGATATTTTGGCTAAAAAAGCGCGGGCTGATGCCGGGTCTGACCTTCTCGAACG 3166 Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATTCAAACGC 61656 ||||||| || || || || ||| | || || || || || || || || | | | | Sbjct 3165 AGTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGCCTT-CTCTACTCCCTC 3107 Query 61657 TATCTGGTGAATCGTCCGTCGGAGGAGCGTGTG-GGTGAGATTGTTCGTGAGGCGGTAAC 61715 | | |||| | || |||||||||| ||| || | || || || | ||||| Sbjct 3106 CTCCGGATGAAGC-TC--ACGGAGGAGCGCGTGAAGTCA-ATCGTGCGGAACGCGGTTGA 3051 Query 61716 TATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGT 61773 || || ||| || |||| ||||| || || | | | | || ||||| || Sbjct 3050 CATAGAGAGGGAGTTCGTCTG--CGACGCGTTACCGTGCGCCTTAGTTGGGATGAACGGT 2993 Query 61774 GGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGG-TAT 61832 | || ||| ||||| || || || || || || | ||| ||| | ||||| ||| Sbjct 2992 GATCTGATGGGTCAGTACATCGAGTTCGTCGCTGATAGGCTGCTGGGTGCGTTGGGATAT 2933 Query 61833 --GAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGAT 61890 ||||| | ||| || | | ||||||||||||| ||||| ||||| || | Sbjct 2932 GGGAAGC---TGTATGATGTGCAGAACCCATTTGATTGGATGGAGCTGATTAGTCTTCAG 2876 Query 61891 GGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || ||||| ||||| || ||||| | || || || || || Sbjct 2875 GGGAAGACCAATTTCTTTGAGAAGAGAGTTGGGGAGTACCA 2835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396997109994080