Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq112910 140 4e-28 seq68602 93.3 5e-14 >seq112910 Length=6904 Score = 140 bits (154), Expect = 4e-28 Identities = 124/155 (80%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 160460 GGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTC 160519 ||||||| |||| |||||||||||| || || || ||||| || || ||||| || || Sbjct 4216 GGTTACAGATTCGATCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 4275 Query 160520 GGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTC 160579 || || ||||||||| ||||||| |||||||| || || ||| | ||||||||| | Sbjct 4276 GGCCGATTGATCTTCTAATATGCTAGTTTTAACAATTCTCGTTCTTTACACTTCTTCTTA 4335 Query 160580 GCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGC 160614 |||||||||||||| || || ||||||||||| || Sbjct 4336 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGC 4370 >seq68602 Length=1998 Score = 93.3 bits (102), Expect = 5e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 160975 CTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTTGC 161034 || ||||| || || || || ||| | ||| || ||||||||||| || ||| | ||| Sbjct 689 CTCGACGCCGCCGAGGAGGCCGGTCTCGACCTCCCTTACTCCTGTCGCGCCGGTTCCTGC 630 Query 161035 TCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCA-ATCTTTCCT 161093 ||| | || || || ||| ||| ||| || || || || ||||| || | |||| || Sbjct 629 TCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGTCTGACCAGAGCTTT-CT 571 Query 161094 GGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTGA 161153 |||||||| || |||| || |||||||| || || || || ||||| | ||||| Sbjct 570 TGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTCGCCTATCCTTCCTCTGA 511 Query 161154 TGTAACTATT 161163 ||| ||| || Sbjct 510 TGTTACTCTT 501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550563947211600