Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06]
215,024 sequences; 206,414,839 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq137849 125 4e-27
seq155324 116 2e-24
seq207401 107 1e-21
seq206981 102 5e-20
>seq137849
Length=1698
Score = 125 bits (138), Expect = 4e-27
Identities = 98/117 (84%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| ||||||| ||| ||||| || |||||| ||
Sbjct 175 GAACCCAAAAACTTTGATTTCTCATAAGGTGTCGACGGAGTCCTAAAAGTAACATTCGCC 116
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| ||||||||||| |||| ||||| |||||||||||
Sbjct 115 GATCCCTGGTCGGCATCGTTTATGGTTAAGACTAGGACGATATCTAATCGTCTTCGA 59
>seq155324
Length=499
Score = 116 bits (128), Expect = 2e-24
Identities = 94/114 (82%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61
|||||||| ||||||||||||| |||||||||| ||||| || ||||||| ||
Sbjct 365 AACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCTGCCA 424
Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115
|||||| |||| ||| ||||| |||| |||||| ||||| ||||||||||||||
Sbjct 425 ATCCCTGGTCGACATCGTTTATGGTTGAGACTAGGACGGGATCTGATCGTCTTC 478
>seq207401
Length=2501
Score = 107 bits (118), Expect = 1e-21
Identities = 94/117 (80%), Gaps = 5/117 (4%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| ||||||| | ||||| || ||||||| ||
Sbjct 199 GAACCCAAAAACTTTGATTTCTCATAAGGTGTTGGCGGAGTCCTAAAAGTAACATCCGCC 258
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| ||||| |||||||||||||||||||
Sbjct 259 GATCCCTGGTCGGCATCGTTTATGGTTGAGACT-----GGTATCTGATCGTCTTCGA 310
>seq206981
Length=16910
Score = 102 bits (112), Expect = 5e-20
Identities = 93/116 (80%), Gaps = 1/116 (1%)
Strand=Plus/Plus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61
||| |||| |||||||||||| |||||||||| ||||| || ||||||| | |
Sbjct 4894 AACTCAAAAACTTTGATTTCTTATAAGGTGCCGGCGGAGTCTTAAAAGTAACATCCGCTG 4953
Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| | |||| ||| ||||| |||| |||||| |||| |||||||||||||||||
Sbjct 4954 ATCC-TGGTCGACATCGTTTATGGTTGAGACTAGGACGATATCTGATCGTCTTCGA 5008
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 277838787360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |