Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq137849 125 4e-27 seq155324 116 2e-24 seq207401 107 1e-21 seq206981 102 5e-20 >seq137849 Length=1698 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| ||||||| ||| ||||| || |||||| || Sbjct 175 GAACCCAAAAACTTTGATTTCTCATAAGGTGTCGACGGAGTCCTAAAAGTAACATTCGCC 116 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| ||||||||||| |||| ||||| ||||||||||| Sbjct 115 GATCCCTGGTCGGCATCGTTTATGGTTAAGACTAGGACGATATCTAATCGTCTTCGA 59 >seq155324 Length=499 Score = 116 bits (128), Expect = 2e-24 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||| ||||||||||||| |||||||||| ||||| || ||||||| || Sbjct 365 AACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCTGCCA 424 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||||| |||| ||| ||||| |||| |||||| ||||| |||||||||||||| Sbjct 425 ATCCCTGGTCGACATCGTTTATGGTTGAGACTAGGACGGGATCTGATCGTCTTC 478 >seq207401 Length=2501 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 5/117 (4%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| ||||||| | ||||| || ||||||| || Sbjct 199 GAACCCAAAAACTTTGATTTCTCATAAGGTGTTGGCGGAGTCCTAAAAGTAACATCCGCC 258 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| ||||| ||||||||||||||||||| Sbjct 259 GATCCCTGGTCGGCATCGTTTATGGTTGAGACT-----GGTATCTGATCGTCTTCGA 310 >seq206981 Length=16910 Score = 102 bits (112), Expect = 5e-20 Identities = 93/116 (80%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 ||| |||| |||||||||||| |||||||||| ||||| || ||||||| | | Sbjct 4894 AACTCAAAAACTTTGATTTCTTATAAGGTGCCGGCGGAGTCTTAAAAGTAACATCCGCTG 4953 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||| ||| ||||| |||| |||||| |||| ||||||||||||||||| Sbjct 4954 ATCC-TGGTCGACATCGTTTATGGTTGAGACTAGGACGATATCTGATCGTCTTCGA 5008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 277838787360