Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq207401 242 7e-62 seq158020 205 2e-50 seq200453 170 3e-40 seq206981 134 3e-29 seq198471 73.4 7e-11 seq171264 73.4 7e-11 >seq207401 Length=2501 Score = 242 bits (268), Expect = 7e-62 Identities = 205/248 (83%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| ||||| | |||||||||||| Sbjct 557 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTAGATACATTAGCAT 498 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| ||||||| | ||| || |||||||| Sbjct 497 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGTCTTCGGGATCGGAGTAATGAT 439 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||||| ||| ||||||||| | ||||| || || ||||||||||||||||||||||| Sbjct 438 TAATAAGGACAGTCGGGGGCATTCGTATTTCATAGTTAGAGGTGAAATTCTTGGATTTAT 379 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 378 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 320 Query 311 GTTAGGGG 318 ||| |||| Sbjct 319 GTTGGGGG 312 >seq158020 Length=530 Score = 205 bits (226), Expect = 2e-50 Identities = 193/242 (80%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || ||||||| || ||||||||||| |||||||| | || |||| | |||||||||||| Sbjct 143 CTGTTACTTTAAAGAAATTAGAGTGCTCAAAGCAAGACTACGCTCTGGATACATTAGCAT 202 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| | |||| | ||| || |||||||| Sbjct 203 GGGATAACATCATAGGATTT-CGGTCCTATTCTATTGGCCTTCGGGATCGGAGTAATGAT 261 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| | ||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 262 TAACAAGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 321 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 322 GAAAGGGGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 380 Query 311 GT 312 || Sbjct 381 GT 382 >seq200453 Length=799 Score = 170 bits (188), Expect = 3e-40 Identities = 163/206 (79%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 594 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTAGATACATTAGCAT 653 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | ||| ||||| |||||| | ||| | |||||||| Sbjct 654 GGGATAACATCATAGGATTTT-GGTCCTATTATGTTGGCCTTCGGGATCAGAGTAATGAT 712 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| | ||| | ||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 713 TAACAAGGACAATCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 772 Query 251 TGAAGACTAACTACTGCGAAAGCGTT 276 ||||| ||| ||||||||||| || Sbjct 773 GAAAGACGAACAACTGCGAAAGCATT 798 >seq206981 Length=16910 Score = 134 bits (148), Expect = 3e-29 Identities = 141/182 (77%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| |||||| ||||||||||||| || | ||| | |||||||||||| Sbjct 5292 CTATTACTTTGAAGAAATTAAAGTGTTCAAAGCAAGCTTACCCTCTGGATACATTAGCAT 5233 Query 131 GGAATAATAGA--ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 || |||| | | ||||| | | ||| ||||||||||| | ||| || |||||| Sbjct 5232 GGGATAACATATCATAGG-CTTTTGGTCATATTTTGTTGGCCTTCGGGATCGGAGTAATG 5174 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||| | |||||||| ||| | ||||| || |||| ||||||||||||||||||| Sbjct 5173 ATTAACATGGATAGTCATGGGCATTCGTATTTCATAGTCAAAGGTGAAATTCTTGGATTT 5114 Query 249 AT 250 || Sbjct 5113 AT 5112 >seq198471 Length=1072 Score = 73.4 bits (80), Expect = 7e-11 Identities = 54/62 (87%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 1010 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 1069 Query 131 GG 132 || Sbjct 1070 GG 1071 >seq171264 Length=1179 Score = 73.4 bits (80), Expect = 7e-11 Identities = 54/62 (87%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 64 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTAGATACATTAGCAT 5 Query 131 GG 132 || Sbjct 4 GG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913232100352