Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06]
215,024 sequences; 206,414,839 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq207401 242 7e-62
seq158020 205 2e-50
seq200453 170 3e-40
seq206981 134 3e-29
seq198471 73.4 7e-11
seq171264 73.4 7e-11
>seq207401
Length=2501
Score = 242 bits (268), Expect = 7e-62
Identities = 205/248 (83%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| ||||| | ||||||||||||
Sbjct 557 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTAGATACATTAGCAT 498
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| ||||||| | ||| || ||||||||
Sbjct 497 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGTCTTCGGGATCGGAGTAATGAT 439
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||||| ||| ||||||||| | ||||| || || |||||||||||||||||||||||
Sbjct 438 TAATAAGGACAGTCGGGGGCATTCGTATTTCATAGTTAGAGGTGAAATTCTTGGATTTAT 379
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 378 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 320
Query 311 GTTAGGGG 318
||| ||||
Sbjct 319 GTTGGGGG 312
>seq158020
Length=530
Score = 205 bits (226), Expect = 2e-50
Identities = 193/242 (80%), Gaps = 3/242 (1%)
Strand=Plus/Plus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| ||||||| || ||||||||||| |||||||| | || |||| | ||||||||||||
Sbjct 143 CTGTTACTTTAAAGAAATTAGAGTGCTCAAAGCAAGACTACGCTCTGGATACATTAGCAT 202
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| | |||| | ||| || ||||||||
Sbjct 203 GGGATAACATCATAGGATTT-CGGTCCTATTCTATTGGCCTTCGGGATCGGAGTAATGAT 261
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| | ||| ||||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 262 TAACAAGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 321
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 322 GAAAGGGGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 380
Query 311 GT 312
||
Sbjct 381 GT 382
>seq200453
Length=799
Score = 170 bits (188), Expect = 3e-40
Identities = 163/206 (79%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 594 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTAGATACATTAGCAT 653
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | ||| ||||| |||||| | ||| | ||||||||
Sbjct 654 GGGATAACATCATAGGATTTT-GGTCCTATTATGTTGGCCTTCGGGATCAGAGTAATGAT 712
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| | ||| | ||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 713 TAACAAGGACAATCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 772
Query 251 TGAAGACTAACTACTGCGAAAGCGTT 276
||||| ||| ||||||||||| ||
Sbjct 773 GAAAGACGAACAACTGCGAAAGCATT 798
>seq206981
Length=16910
Score = 134 bits (148), Expect = 3e-29
Identities = 141/182 (77%), Gaps = 4/182 (2%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| |||||| ||||||||||||| || | ||| | ||||||||||||
Sbjct 5292 CTATTACTTTGAAGAAATTAAAGTGTTCAAAGCAAGCTTACCCTCTGGATACATTAGCAT 5233
Query 131 GGAATAATAGA--ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188
|| |||| | | ||||| | | ||| ||||||||||| | ||| || ||||||
Sbjct 5232 GGGATAACATATCATAGG-CTTTTGGTCATATTTTGTTGGCCTTCGGGATCGGAGTAATG 5174
Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248
||||| | |||||||| ||| | ||||| || |||| |||||||||||||||||||
Sbjct 5173 ATTAACATGGATAGTCATGGGCATTCGTATTTCATAGTCAAAGGTGAAATTCTTGGATTT 5114
Query 249 AT 250
||
Sbjct 5113 AT 5112
>seq198471
Length=1072
Score = 73.4 bits (80), Expect = 7e-11
Identities = 54/62 (87%), Gaps = 1/62 (2%)
Strand=Plus/Plus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 1010 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 1069
Query 131 GG 132
||
Sbjct 1070 GG 1071
>seq171264
Length=1179
Score = 73.4 bits (80), Expect = 7e-11
Identities = 54/62 (87%), Gaps = 1/62 (2%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 64 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTAGATACATTAGCAT 5
Query 131 GG 132
||
Sbjct 4 GG 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 913232100352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |