Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06]
215,024 sequences; 206,414,839 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq12494 176 2e-41
seq204630 154 6e-35
seq189501 140 1e-30
seq182602 140 1e-30
seq136684 89.7 2e-15
>seq12494
Length=1003
Score = 176 bits (194), Expect = 2e-41
Identities = 200/262 (76%), Gaps = 6/262 (2%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463
|||||||||||| |||||||||||| |||| | |||| | ||||||| | || | |
Sbjct 739 CGGCCCGTCTTGAAACACGGACCAAAGAGTTTGACATGTGTGCGAGTCAACAGATGATTA 798
Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGA-GGGTGCACCATCGA 521
||||| | | || || ||| | || | | |||| ||| | | ||||||||| |||
Sbjct 799 AACCCATAAGACGCAAAGAAGCT-AATGC--GCGGGATCCCTTTATGGGTGCACCGCCGA 855
Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581
| || | | || | || || || || |||| |||||| |||| |||||||||||||
Sbjct 856 CTGACCTTAATCTTTTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCAGGACCCGAAAGAT 915
Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641
|||||||||||| ||| ||| ||||| ||||||||||||||||||||| ||||||| |
Sbjct 916 GGTGAACTATGCTTGAGCGGGGCGAAGCTAGAGGAAACTCTGGTGGAGGCCCGCAGCGAT 975
Query 642 TCTGGCGTGCAAATCGATCGTC 663
||| ||||||||||| |||||
Sbjct 976 ACTGACGTGCAAATCGTTCGTC 997
>seq204630
Length=378
Score = 154 bits (170), Expect = 6e-35
Identities = 133/165 (81%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
||| |||||| |||||||||||||||||| | || ||| |||||||| | || || ||
Sbjct 77 TCGGCGAGTCAGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 136
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
|||||| ||| ||||||||||||| ||||||| | || ||||||||||||| ||||
Sbjct 137 TAAATACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 196
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| ||||||||| ||| || | ||||||||| | |||||||||
Sbjct 197 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 241
>seq189501
Length=943
Score = 140 bits (154), Expect = 1e-30
Identities = 130/165 (79%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
||| | ||||| |||||||||||||||||| |||| ||| |||||||| | || || |
Sbjct 480 TCGGCAAGTCGGGTTGTTTGGGAATGCAGCCCTAATCGGGCGGTAAATTCCGTCCAAGAC 539
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
|||||| || ||||||||||||| ||||||| | || |||| ||||||| ||||
Sbjct 540 TAAATACGGGAGAGAGACCGATAGCAAACAAGTACTGCGAGGGAAAAATGAAAAAGACTT 599
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| ||||||||| ||| || | ||||||||| | |||||||||
Sbjct 600 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 644
>seq182602
Length=610
Score = 140 bits (154), Expect = 1e-30
Identities = 130/165 (79%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
||| | ||||| |||||||||||||||||| |||| ||| |||||||| | || || |
Sbjct 146 TCGGCAAGTCGGGTTGTTTGGGAATGCAGCCCTAATCGGGCGGTAAATTCCGTCCAAGAC 205
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
|||||| || ||||||||||||| ||||||| | || |||| ||||||| ||||
Sbjct 206 TAAATACGGGAGAGAGACCGATAGCAAACAAGTACTGCGAGGGAAAAATGAAAAAGACTT 265
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| ||||||||| ||| || | ||||||||| | |||||||||
Sbjct 266 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 310
>seq136684
Length=2631
Score = 89.7 bits (98), Expect = 2e-15
Identities = 79/98 (81%), Gaps = 3/98 (3%)
Strand=Plus/Minus
Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643
|||||||||||||| ||| ||||| |||||||||||| || ||||| | ||| | |
Sbjct 2555 TGAACTATGCCTGAGCGGGGCGAAGCTAGAGGAAACTCTTGTCGAGGC---CCGCGATAC 2499
Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|| |||| |||||| ||||| ||||||||||||| ||
Sbjct 2498 TGACGTGTAAATCGTTCGTCTGATTTGGGTATAGGAGC 2461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2075387735200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |