Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq12494 176 2e-41 seq204630 154 6e-35 seq189501 140 1e-30 seq182602 140 1e-30 seq136684 89.7 2e-15 >seq12494 Length=1003 Score = 176 bits (194), Expect = 2e-41 Identities = 200/262 (76%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 |||||||||||| |||||||||||| |||| | |||| | ||||||| | || | | Sbjct 739 CGGCCCGTCTTGAAACACGGACCAAAGAGTTTGACATGTGTGCGAGTCAACAGATGATTA 798 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGA-GGGTGCACCATCGA 521 ||||| | | || || ||| | || | | |||| ||| | | ||||||||| ||| Sbjct 799 AACCCATAAGACGCAAAGAAGCT-AATGC--GCGGGATCCCTTTATGGGTGCACCGCCGA 855 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 | || | | || | || || || || |||| |||||| |||| ||||||||||||| Sbjct 856 CTGACCTTAATCTTTTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCAGGACCCGAAAGAT 915 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 |||||||||||| ||| ||| ||||| ||||||||||||||||||||| ||||||| | Sbjct 916 GGTGAACTATGCTTGAGCGGGGCGAAGCTAGAGGAAACTCTGGTGGAGGCCCGCAGCGAT 975 Query 642 TCTGGCGTGCAAATCGATCGTC 663 ||| ||||||||||| ||||| Sbjct 976 ACTGACGTGCAAATCGTTCGTC 997 >seq204630 Length=378 Score = 154 bits (170), Expect = 6e-35 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| |||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 77 TCGGCGAGTCAGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 136 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| ||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 137 TAAATACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 196 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 197 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 241 >seq189501 Length=943 Score = 140 bits (154), Expect = 1e-30 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| | ||||| |||||||||||||||||| |||| ||| |||||||| | || || | Sbjct 480 TCGGCAAGTCGGGTTGTTTGGGAATGCAGCCCTAATCGGGCGGTAAATTCCGTCCAAGAC 539 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| || ||||||||||||| ||||||| | || |||| ||||||| |||| Sbjct 540 TAAATACGGGAGAGAGACCGATAGCAAACAAGTACTGCGAGGGAAAAATGAAAAAGACTT 599 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 600 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 644 >seq182602 Length=610 Score = 140 bits (154), Expect = 1e-30 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| | ||||| |||||||||||||||||| |||| ||| |||||||| | || || | Sbjct 146 TCGGCAAGTCGGGTTGTTTGGGAATGCAGCCCTAATCGGGCGGTAAATTCCGTCCAAGAC 205 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| || ||||||||||||| ||||||| | || |||| ||||||| |||| Sbjct 206 TAAATACGGGAGAGAGACCGATAGCAAACAAGTACTGCGAGGGAAAAATGAAAAAGACTT 265 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 266 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 310 >seq136684 Length=2631 Score = 89.7 bits (98), Expect = 2e-15 Identities = 79/98 (81%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 |||||||||||||| ||| ||||| |||||||||||| || ||||| | ||| | | Sbjct 2555 TGAACTATGCCTGAGCGGGGCGAAGCTAGAGGAAACTCTTGTCGAGGC---CCGCGATAC 2499 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || |||| |||||| ||||| ||||||||||||| || Sbjct 2498 TGACGTGTAAATCGTTCGTCTGATTTGGGTATAGGAGC 2461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2075387735200