Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06]
215,024 sequences; 206,414,839 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq137849 289 5e-76
seq207401 190 3e-46
seq155324 127 3e-27
seq137008 114 2e-23
seq207379 91.5 2e-16
seq143763 80.6 4e-13
>seq137849
Length=1698
Score = 289 bits (320), Expect = 5e-76
Identities = 225/262 (86%), Gaps = 7/262 (3%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCG--CGCGTGCGGCCCAGAACATCTAAGGGCATCACA 59
||||| || | | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 562 ACTCGTTGAATACATCAGTGTAGCGAGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 503
Query 60 GACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCC 117
||||||||||||||||||| ||| |||||| |||| | ||||||||||||||||||
Sbjct 502 GACCTGTTATTGCCTCAAATTTC-ATTGGCCT-AAGCGGCCATAGTCCCTCTAAGAAGCT 445
Query 118 AGCCACCAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176
|||| | | | | || |||| |||||| | | ||||||||||||||| ||||
Sbjct 444 AGCCGCGGAGGAGACCTCCGCATAGCTAGTTAGCAAGCTGAGGTCTCGTTCGTTAACGGA 385
Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 325
Query 237 AAGAAAGAGCTATCAATCTGTC 258
||||||||||| ||| ||||||
Sbjct 324 AAGAAAGAGCTCTCAGTCTGTC 303
>seq207401
Length=2501
Score = 190 bits (210), Expect = 3e-46
Identities = 154/183 (84%), Gaps = 5/183 (3%)
Strand=Plus/Plus
Query 55 TCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAG 112
|||||||||||||||||||||||| |||| | | || |||| | ||||||||||||||
Sbjct 1 TCACAGACCTGTTATTGCCTCAAATTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAG 58
Query 113 AAGCCAGCCACCAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTA 171
|||| ||| | | | | || | |||| |||||||| |||||||||||||||||
Sbjct 59 AAGCTGGCCGCGGAGGAAACCTCCACATAGCTAGTTAGCAGGCTAAGGTCTCGTTCGTTA 118
Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 119 ACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATTCACCACCACCCATA 178
Query 232 GAA 234
|||
Sbjct 179 GAA 181
>seq155324
Length=499
Score = 127 bits (140), Expect = 3e-27
Identities = 75/78 (96%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 ACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 218
Query 241 AAGAGCTATCAATCTGTC 258
||||||| ||| ||||||
Sbjct 219 AAGAGCTCTCAGTCTGTC 236
>seq137008
Length=962
Score = 114 bits (126), Expect = 2e-23
Identities = 79/88 (90%), Gaps = 1/88 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 200 ACTCGTTGAATACATCAGTGTAGCGAGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 141
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGC 89
||| ||||| |||||||||||| |||||
Sbjct 140 CCTATTATTACCTCAAACTTCC-TTGGC 114
>seq207379
Length=1491
Score = 91.5 bits (100), Expect = 2e-16
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1420
Query 62 CCT 64
|||
Sbjct 1419 CCT 1417
>seq143763
Length=1167
Score = 80.6 bits (88), Expect = 4e-13
Identities = 73/92 (79%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCA 215
|||||||| | || | | ||||||||||||||||| |||||||| ||| ||||| ||
Sbjct 692 AAGGTCTCACTAGTGAACATAATTAACCAGACAAATCGCTCCACCATCTACGAACGATCA 633
Query 216 TGCACCACCACCCATAGAATCAAGAAAGAGCT 247
| || ||| | |||| |||||||||| ||||
Sbjct 632 TACATCACGGCTCATAAAATCAAGAAATAGCT 601
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795140229744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |