Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq137849 289 5e-76 seq207401 190 3e-46 seq155324 127 3e-27 seq137008 114 2e-23 seq207379 91.5 2e-16 seq143763 80.6 4e-13 >seq137849 Length=1698 Score = 289 bits (320), Expect = 5e-76 Identities = 225/262 (86%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCG--CGCGTGCGGCCCAGAACATCTAAGGGCATCACA 59 ||||| || | | ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 562 ACTCGTTGAATACATCAGTGTAGCGAGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 503 Query 60 GACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCC 117 ||||||||||||||||||| ||| |||||| |||| | |||||||||||||||||| Sbjct 502 GACCTGTTATTGCCTCAAATTTC-ATTGGCCT-AAGCGGCCATAGTCCCTCTAAGAAGCT 445 Query 118 AGCCACCAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 |||| | | | | || |||| |||||| | | ||||||||||||||| |||| Sbjct 444 AGCCGCGGAGGAGACCTCCGCATAGCTAGTTAGCAAGCTGAGGTCTCGTTCGTTAACGGA 385 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 384 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 325 Query 237 AAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||| |||||| Sbjct 324 AAGAAAGAGCTCTCAGTCTGTC 303 >seq207401 Length=2501 Score = 190 bits (210), Expect = 3e-46 Identities = 154/183 (84%), Gaps = 5/183 (3%) Strand=Plus/Plus Query 55 TCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAG 112 |||||||||||||||||||||||| |||| | | || |||| | |||||||||||||| Sbjct 1 TCACAGACCTGTTATTGCCTCAAATTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAG 58 Query 113 AAGCCAGCCACCAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTA 171 |||| ||| | | | | || | |||| |||||||| ||||||||||||||||| Sbjct 59 AAGCTGGCCGCGGAGGAAACCTCCACATAGCTAGTTAGCAGGCTAAGGTCTCGTTCGTTA 118 Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231 |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 119 ACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATTCACCACCACCCATA 178 Query 232 GAA 234 ||| Sbjct 179 GAA 181 >seq155324 Length=499 Score = 127 bits (140), Expect = 3e-27 Identities = 75/78 (96%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 159 ACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 218 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| ||| |||||| Sbjct 219 AAGAGCTCTCAGTCTGTC 236 >seq137008 Length=962 Score = 114 bits (126), Expect = 2e-23 Identities = 79/88 (90%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 200 ACTCGTTGAATACATCAGTGTAGCGAGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 141 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGC 89 ||| ||||| |||||||||||| ||||| Sbjct 140 CCTATTATTACCTCAAACTTCC-TTGGC 114 >seq207379 Length=1491 Score = 91.5 bits (100), Expect = 2e-16 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1479 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1420 Query 62 CCT 64 ||| Sbjct 1419 CCT 1417 >seq143763 Length=1167 Score = 80.6 bits (88), Expect = 4e-13 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCA 215 |||||||| | || | | ||||||||||||||||| |||||||| ||| ||||| || Sbjct 692 AAGGTCTCACTAGTGAACATAATTAACCAGACAAATCGCTCCACCATCTACGAACGATCA 633 Query 216 TGCACCACCACCCATAGAATCAAGAAAGAGCT 247 | || ||| | |||| |||||||||| |||| Sbjct 632 TACATCACGGCTCATAAAATCAAGAAATAGCT 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795140229744