Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq137849 271 1e-70 seq137008 161 2e-37 seq207379 91.5 3e-16 seq207401 80.6 5e-13 >seq137849 Length=1698 Score = 271 bits (300), Expect = 1e-70 Identities = 220/262 (84%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||||| | ||| | ||| ||| || ||||||||||||||||||||| Sbjct 446 GCTTCTTAGAGGGACTATGGCCGCTTAGGCCAATGAAA-TTTGAGGCAATAACAGGTCTG 504 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGC--GCTACACTGACAGAGCCAACGAGTTC 186 |||||||||||||||||||||||||||||||| |||||||||| | |||||||| Sbjct 505 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCTCGCTACACTGATGTATTCAACGAGTCT 564 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 || |||||| || | | | |||||||||| | ||| | ||||| ||||||| || | Sbjct 565 ATAGCCTTGGTCGACATGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATTGATC 623 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 ||||||||| ||| |||||||||| |||| ||||||||| ||| ||||||||| |||||| Sbjct 624 ATTGCAATTGTTGGTCTTCAACGATGAATTCCTAGTAAGTGCGAGTCATCAGCTCGCGTT 683 Query 307 GATTACGTCCCTGCCCTTTGTA 328 || ||||||||||||||||||| Sbjct 684 GACTACGTCCCTGCCCTTTGTA 705 >seq137008 Length=962 Score = 161 bits (178), Expect = 2e-37 Identities = 138/169 (82%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 119 GGAAGTTTGAGGTAATAATAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCTCGC 178 Query 163 TACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222 |||||||| | |||||||| || | ||||||| || | |||| ||||| | || Sbjct 179 TACACTGATGTATTCAACGAGTCTATAGCGTTGGCCGACAGACCCGGGTTATCTT-TGAA 237 Query 223 ACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAG 271 | | || || ||| |||||| |||||||||| ||| ||||||||||| Sbjct 238 ATTTCATCATGATGGAGATAGATCATTGCAATTGTTGGTCTTCAACGAG 286 Score = 140 bits (154), Expect = 6e-31 Identities = 123/152 (81%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 177 CAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTG 236 |||||||| || ||||||||| ||| | |||||||||| | ||| | ||||| || Sbjct 280 CAACGAGTCTATAGCCTTGGCCGATAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATG 338 Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATC 296 | |||||| |||||||||| ||| ||||||||||||| | |||||||||| || |||||| Sbjct 339 GAGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAGTTCCTAGTAAGCACGAGTCATC 398 Query 297 AGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| | ||||| ||| | ||||||||||||| Sbjct 399 AGCTCAAGTTGACTACATTCCTGCCCTTTGTA 430 >seq207379 Length=1491 Score = 91.5 bits (100), Expect = 3e-16 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1417 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACG 1476 Query 182 AGT 184 ||| Sbjct 1477 AGT 1479 >seq207401 Length=2501 Score = 80.6 bits (88), Expect = 5e-13 Identities = 89/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGGGTCGCCGGCTTCTTA 78 || |||||||||| |||||||| |||| | | | ||| | ||| |||||||| Sbjct 114 GAACGAGACCTTAGCCTGCTAACTAGCTATGTGGAGGTTTCCTCCGCGGCCAGCTTCTTA 55 Query 79 GAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||| | ||| | ||| | |||| |||||||||||||||||||||||| Sbjct 54 GAGGGACTATGGCCGCTTAGGCCAA-GGAAATTTGAGGCAATAACAGGTCTGTGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945163292672