Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06]
215,024 sequences; 206,414,839 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq137849 271 1e-70
seq137008 161 2e-37
seq207379 91.5 3e-16
seq207401 80.6 5e-13
>seq137849
Length=1698
Score = 271 bits (300), Expect = 1e-70
Identities = 220/262 (84%), Gaps = 6/262 (2%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128
|||||||||||||||||| | ||| | ||| ||| || |||||||||||||||||||||
Sbjct 446 GCTTCTTAGAGGGACTATGGCCGCTTAGGCCAATGAAA-TTTGAGGCAATAACAGGTCTG 504
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGC--GCTACACTGACAGAGCCAACGAGTTC 186
|||||||||||||||||||||||||||||||| |||||||||| | ||||||||
Sbjct 505 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCTCGCTACACTGATGTATTCAACGAGTCT 564
Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246
|| |||||| || | | | |||||||||| | ||| | ||||| ||||||| || |
Sbjct 565 ATAGCCTTGGTCGACATGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATTGATC 623
Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306
||||||||| ||| |||||||||| |||| ||||||||| ||| ||||||||| ||||||
Sbjct 624 ATTGCAATTGTTGGTCTTCAACGATGAATTCCTAGTAAGTGCGAGTCATCAGCTCGCGTT 683
Query 307 GATTACGTCCCTGCCCTTTGTA 328
|| |||||||||||||||||||
Sbjct 684 GACTACGTCCCTGCCCTTTGTA 705
>seq137008
Length=962
Score = 161 bits (178), Expect = 2e-37
Identities = 138/169 (82%), Gaps = 1/169 (1%)
Strand=Plus/Plus
Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 119 GGAAGTTTGAGGTAATAATAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCTCGC 178
Query 163 TACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222
|||||||| | |||||||| || | ||||||| || | |||| ||||| | ||
Sbjct 179 TACACTGATGTATTCAACGAGTCTATAGCGTTGGCCGACAGACCCGGGTTATCTT-TGAA 237
Query 223 ACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAG 271
| | || || ||| |||||| |||||||||| ||| |||||||||||
Sbjct 238 ATTTCATCATGATGGAGATAGATCATTGCAATTGTTGGTCTTCAACGAG 286
Score = 140 bits (154), Expect = 6e-31
Identities = 123/152 (81%), Gaps = 1/152 (1%)
Strand=Plus/Plus
Query 177 CAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTG 236
|||||||| || ||||||||| ||| | |||||||||| | ||| | ||||| ||
Sbjct 280 CAACGAGTCTATAGCCTTGGCCGATAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATG 338
Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATC 296
| |||||| |||||||||| ||| ||||||||||||| | |||||||||| || ||||||
Sbjct 339 GAGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAGTTCCTAGTAAGCACGAGTCATC 398
Query 297 AGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||| | ||||| ||| | |||||||||||||
Sbjct 399 AGCTCAAGTTGACTACATTCCTGCCCTTTGTA 430
>seq207379
Length=1491
Score = 91.5 bits (100), Expect = 3e-16
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1417 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACG 1476
Query 182 AGT 184
|||
Sbjct 1477 AGT 1479
>seq207401
Length=2501
Score = 80.6 bits (88), Expect = 5e-13
Identities = 89/115 (77%), Gaps = 4/115 (3%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGGGTCGCCGGCTTCTTA 78
|| |||||||||| |||||||| |||| | | | ||| | ||| ||||||||
Sbjct 114 GAACGAGACCTTAGCCTGCTAACTAGCTATGTGGAGGTTTCCTCCGCGGCCAGCTTCTTA 55
Query 79 GAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131
|||||||||| | ||| | ||| | |||| ||||||||||||||||||||||||
Sbjct 54 GAGGGACTATGGCCGCTTAGGCCAA-GGAAATTTGAGGCAATAACAGGTCTGTGA 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 945163292672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |