Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq142535 506 7e-141 seq123714 491 1e-136 seq195573 412 1e-112 seq185570 203 1e-49 seq205961 140 1e-30 seq190799 140 1e-30 seq164585 102 3e-19 >seq142535 Length=1113 Score = 506 bits (560), Expect = 7e-141 Identities = 330/362 (91%), Gaps = 1/362 (0%) Strand=Plus/Minus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 |||| |||| | ||||||||| |||| ||| ||||||||||||||||||||| | | Sbjct 876 TCCGATTCACGAAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCGGTGA 817 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 816 -GGCTCGCACTTATACTACACCTCTCAAGTCATTTCACAGAGTCGGACTAGAGTCAAGCT 758 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||| |||||| ||||| ||||||||| ||||| ||| |||||||||||||||||| || Sbjct 757 CAACAAGGTCTTTTTTCCTCGCTGATTCTGCCAAACCCATTCCCTTGGCTGTGGTTTTGC 698 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 697 TGGATAGTAGACAAGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 638 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 637 ATGATGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCACCGTTTACCTGCGCT 578 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 577 TGATTGAATTTCTTCACTTTAACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAACA 518 Query 534 TC 535 || Sbjct 517 TC 516 >seq123714 Length=1783 Score = 491 bits (544), Expect = 1e-136 Identities = 327/362 (90%), Gaps = 1/362 (0%) Strand=Plus/Minus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 |||| ||||| | |||||||||||||| ||| ||||||||||||||||||||| | | Sbjct 994 TCCGATTCATGAAATAAGTAAAAAAACGTTAAAAGTAGTGGTATTTCACTTGCGCGGTGA 935 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 ||||||||||||| |||||||||| ||||||||||||| ||| |||||| ||||||||| Sbjct 934 -GGCTCCCACTTATACTACACCTCTTAAGTCATTTCACAGAGTTGGACTAAAGTCAAGCT 876 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||| |||||| ||||| ||||||||| ||||||||| |||||||||||||||||| || Sbjct 875 CAACAAGGTCTTTTTTCCTCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTTTGC 816 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | ||||||||| | |||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 815 TGGATAGTAGACAAGGACAGTGGGAATCTCTTTAATTCATTCATGCGCGTCACTAATTAG 756 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 755 ATGATTAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCACCGTTTACCTGCGCT 696 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| Sbjct 695 TGATTGAATTTCTTCACTTTAACATTCATAGCACTGGGCAGAAATCACATTGCGTTAACA 636 Query 534 TC 535 || Sbjct 635 TC 634 >seq195573 Length=807 Score = 412 bits (456), Expect = 1e-112 Identities = 328/387 (85%), Gaps = 7/387 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || | | ||||||| ||||||| |||| | |||||||||||| | |||| Sbjct 344 CTTTTGTTCGAAACGAGATTTTTGTTCTCGTTGAGCTCATCTTAGGACACCTACATTATC 403 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||| ||||||||||||||||||| |||||||| || | ||||| Sbjct 404 TTTTAACAGATGTGCCGCTCCAGCCAAACTCCCCACCTAACAATGTCTTCCGCTTGGATC 463 Query 127 GGCCCGC-GAAGGAC-CTTAACG-CCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182 |||||| |||| | ||| | ||| ||| | || | ||| || || | |||| Sbjct 464 AGCCCGCCGAAGCGCGCTTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCTGATTCA 521 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 | || ||||||||| |||| ||| ||||||||||||||||||||||| | |||||||| Sbjct 522 TAGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGTGA-GGCTCCCA 580 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 581 CTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 640 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 641 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 700 Query 363 GATAGGGACAGTGGGAATCTCGTTAAT 389 || |||||||||| ||||||||||||| Sbjct 701 GACAGGGACAGTGAGAATCTCGTTAAT 727 >seq185570 Length=361 Score = 203 bits (224), Expect = 1e-49 Identities = 126/135 (93%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 278 GGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCC 337 ||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| Sbjct 227 GGACTAGAGTCAAGCTCAACATGGTCTTCTTTCCCCGTTGATTCTAACAAGCCCGTTCCT 286 Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 ||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 287 TTGGCTGTGGTTTTGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCAT 346 Query 398 GCGCGTCACTAATTA 412 ||||||||||||||| Sbjct 347 GCGCGTCACTAATTA 361 Score = 152 bits (168), Expect = 2e-34 Identities = 110/127 (87%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| | ||||||||||||| |||| | ||||||||||||||||||| Sbjct 97 CTTTTGTTCCACACGTGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 156 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 157 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 216 Query 127 GGCCCGC 133 ||||| Sbjct 217 ACCCCGC 223 >seq205961 Length=575 Score = 140 bits (154), Expect = 1e-30 Identities = 111/132 (84%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | |||| ||||| |||||||| Sbjct 233 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAAGACACTTGCGTTATC 292 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 | |||||||||||||||||||||||||||||||||||||||||||| || || | ||| Sbjct 293 TTCTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCACTCAAATC 352 Query 127 GGCCCG-CGAAG 137 ||||| ||||| Sbjct 353 AGCCCGCCGAAG 364 >seq190799 Length=1612 Score = 140 bits (154), Expect = 1e-30 Identities = 111/132 (84%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| |||||||||||||| |||| | |||| |||||||||||||| Sbjct 898 CTTTTGTTCCACATGAGATTTCTGTTCTTGTTGAGCTCATCTTAAGACACCTGCGTTATC 839 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 | |||||||||||||||||||||||||| ||||||||||||||||| || || || ||| Sbjct 838 TTCTAACAGATGTGCCGCCCCAGCCAAACACCCCACCTGACAATGTCTTCCACTCGAATC 779 Query 127 GGCCCG-CGAAG 137 ||||| ||||| Sbjct 778 AGCCCGTCGAAG 767 >seq164585 Length=1239 Score = 102 bits (112), Expect = 3e-19 Identities = 109/145 (75%), Gaps = 12/145 (8%) Strand=Plus/Plus Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA-------- 452 ||||||||||||||||| || |||||| || | |||||| | || || ||| Sbjct 127 CGTCACTAATTAGATGATGAAACATTTGACTCCTTTAAGATAATCTTAATTAGTTAATTA 186 Query 453 ---CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509 |||||| |||||| | || ||||||||||||||||||||||||| | || ||||| Sbjct 187 TTACTCCCGTTGTTTACTCACGTTTGGTTGAATTTCTTCACTTTGACAATTAG-GCACTA 245 Query 510 GGCAGAAATCACATTGCGTCAACAT 534 || |||||| |||||| | |||| Sbjct 246 GGTAGAAATTGCATTGCATTGACAT 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1631683927552