Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06]
215,024 sequences; 206,414,839 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq142535 506 7e-141
seq123714 491 1e-136
seq195573 412 1e-112
seq185570 203 1e-49
seq205961 140 1e-30
seq190799 140 1e-30
seq164585 102 3e-19
>seq142535
Length=1113
Score = 506 bits (560), Expect = 7e-141
Identities = 330/362 (91%), Gaps = 1/362 (0%)
Strand=Plus/Minus
Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233
|||| |||| | ||||||||| |||| ||| ||||||||||||||||||||| | |
Sbjct 876 TCCGATTCACGAAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCGGTGA 817
Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293
||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 816 -GGCTCGCACTTATACTACACCTCTCAAGTCATTTCACAGAGTCGGACTAGAGTCAAGCT 758
Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353
||||| |||||| ||||| ||||||||| ||||| ||| |||||||||||||||||| ||
Sbjct 757 CAACAAGGTCTTTTTTCCTCGCTGATTCTGCCAAACCCATTCCCTTGGCTGTGGTTTTGC 698
Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413
| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 TGGATAGTAGACAAGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 638
Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 637 ATGATGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCACCGTTTACCTGCGCT 578
Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 577 TGATTGAATTTCTTCACTTTAACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAACA 518
Query 534 TC 535
||
Sbjct 517 TC 516
>seq123714
Length=1783
Score = 491 bits (544), Expect = 1e-136
Identities = 327/362 (90%), Gaps = 1/362 (0%)
Strand=Plus/Minus
Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233
|||| ||||| | |||||||||||||| ||| ||||||||||||||||||||| | |
Sbjct 994 TCCGATTCATGAAATAAGTAAAAAAACGTTAAAAGTAGTGGTATTTCACTTGCGCGGTGA 935
Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293
||||||||||||| |||||||||| ||||||||||||| ||| |||||| |||||||||
Sbjct 934 -GGCTCCCACTTATACTACACCTCTTAAGTCATTTCACAGAGTTGGACTAAAGTCAAGCT 876
Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353
||||| |||||| ||||| ||||||||| ||||||||| |||||||||||||||||| ||
Sbjct 875 CAACAAGGTCTTTTTTCCTCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTTTGC 816
Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413
| ||||||||| | |||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 815 TGGATAGTAGACAAGGACAGTGGGAATCTCTTTAATTCATTCATGCGCGTCACTAATTAG 756
Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473
|||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 755 ATGATTAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCACCGTTTACCTGCGCT 696
Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 695 TGATTGAATTTCTTCACTTTAACATTCATAGCACTGGGCAGAAATCACATTGCGTTAACA 636
Query 534 TC 535
||
Sbjct 635 TC 634
>seq195573
Length=807
Score = 412 bits (456), Expect = 1e-112
Identities = 328/387 (85%), Gaps = 7/387 (2%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || | | ||||||| ||||||| |||| | |||||||||||| | ||||
Sbjct 344 CTTTTGTTCGAAACGAGATTTTTGTTCTCGTTGAGCTCATCTTAGGACACCTACATTATC 403
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||| ||||||||||||||||||| |||||||| || | |||||
Sbjct 404 TTTTAACAGATGTGCCGCTCCAGCCAAACTCCCCACCTAACAATGTCTTCCGCTTGGATC 463
Query 127 GGCCCGC-GAAGGAC-CTTAACG-CCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182
|||||| |||| | ||| | ||| ||| | || | ||| || || | ||||
Sbjct 464 AGCCCGCCGAAGCGCGCTTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCTGATTCA 521
Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242
| || ||||||||| |||| ||| ||||||||||||||||||||||| | ||||||||
Sbjct 522 TAGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGTGA-GGCTCCCA 580
Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 CTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 640
Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 641 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 700
Query 363 GATAGGGACAGTGGGAATCTCGTTAAT 389
|| |||||||||| |||||||||||||
Sbjct 701 GACAGGGACAGTGAGAATCTCGTTAAT 727
>seq185570
Length=361
Score = 203 bits (224), Expect = 1e-49
Identities = 126/135 (93%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 278 GGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCC 337
||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||
Sbjct 227 GGACTAGAGTCAAGCTCAACATGGTCTTCTTTCCCCGTTGATTCTAACAAGCCCGTTCCT 286
Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397
||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 287 TTGGCTGTGGTTTTGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCAT 346
Query 398 GCGCGTCACTAATTA 412
|||||||||||||||
Sbjct 347 GCGCGTCACTAATTA 361
Score = 152 bits (168), Expect = 2e-34
Identities = 110/127 (87%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| | ||||||||||||| |||| | |||||||||||||||||||
Sbjct 97 CTTTTGTTCCACACGTGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 156
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 157 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 216
Query 127 GGCCCGC 133
|||||
Sbjct 217 ACCCCGC 223
>seq205961
Length=575
Score = 140 bits (154), Expect = 1e-30
Identities = 111/132 (84%), Gaps = 1/132 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||||||||||| |||| | |||| ||||| ||||||||
Sbjct 233 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAAGACACTTGCGTTATC 292
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
| |||||||||||||||||||||||||||||||||||||||||||| || || | |||
Sbjct 293 TTCTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCACTCAAATC 352
Query 127 GGCCCG-CGAAG 137
||||| |||||
Sbjct 353 AGCCCGCCGAAG 364
>seq190799
Length=1612
Score = 140 bits (154), Expect = 1e-30
Identities = 111/132 (84%), Gaps = 1/132 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| |||||||||||||| |||| | |||| ||||||||||||||
Sbjct 898 CTTTTGTTCCACATGAGATTTCTGTTCTTGTTGAGCTCATCTTAAGACACCTGCGTTATC 839
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
| |||||||||||||||||||||||||| ||||||||||||||||| || || || |||
Sbjct 838 TTCTAACAGATGTGCCGCCCCAGCCAAACACCCCACCTGACAATGTCTTCCACTCGAATC 779
Query 127 GGCCCG-CGAAG 137
||||| |||||
Sbjct 778 AGCCCGTCGAAG 767
>seq164585
Length=1239
Score = 102 bits (112), Expect = 3e-19
Identities = 109/145 (75%), Gaps = 12/145 (8%)
Strand=Plus/Plus
Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA-------- 452
||||||||||||||||| || |||||| || | |||||| | || || |||
Sbjct 127 CGTCACTAATTAGATGATGAAACATTTGACTCCTTTAAGATAATCTTAATTAGTTAATTA 186
Query 453 ---CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509
|||||| |||||| | || ||||||||||||||||||||||||| | || |||||
Sbjct 187 TTACTCCCGTTGTTTACTCACGTTTGGTTGAATTTCTTCACTTTGACAATTAG-GCACTA 245
Query 510 GGCAGAAATCACATTGCGTCAACAT 534
|| |||||| |||||| | ||||
Sbjct 246 GGTAGAAATTGCATTGCATTGACAT 270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1631683927552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |