Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq171264 536 4e-150 seq203790 535 1e-149 seq200453 390 3e-106 seq197652 233 6e-59 seq122586 215 2e-53 seq189592 172 2e-40 seq46059 96.9 1e-17 >seq171264 Length=1179 Score = 536 bits (594), Expect = 4e-150 Identities = 430/510 (84%), Gaps = 9/510 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| | || |||| || ||| | || |||||||||||||||||| Sbjct 288 GTACTCATTCCAATTACCAAACTCAAA-GATCCCAGCATTGTTATTTATTGTCACTACCT 346 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||| ||||||||| |||| ||||||||| |||||||| Sbjct 347 CCCCGTGTCAGGATTGGGTAATTTGCACGCCTGCTGTCTTCATTGGATGTGATAGCCGTT 406 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||||||||||||||||||| |||| ||| || ||||||||| Sbjct 407 TCTCAGGCTCCTTCTCCGGAATCGAACCCTAATTCTCCGTCACCTGTCACCACCATGGTA 466 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||||||||||||||||||||||||| |||||||||| | | ||| || Sbjct 467 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGATGCGTTGCCAGCA 526 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCC--CCGAAG--GGCG 295 | |||| |||||| ||| |||||| |||||||| ||| | | | | ||| ||| Sbjct 527 CAAAGGTTGTGCGATCCGTCGAGTTATCATGAATCATCAATGCGACAGGCAAAGCCCGCG 586 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 ||| ||| ||||||||||| || ||||||| ||||||||| ||| | ||| ||||||| Sbjct 587 TTGACCTTTAATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCACGTATTAG 646 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||||| Sbjct 647 CTCTAGAATTACTACGGTTATCCGAGTAGT-AGATACCATCAAACAAACTATAACTGATT 705 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTA 473 |||||||||| |||||||||||| || | ||| | | ||||||| ||||||| ||||| Sbjct 706 TAATGAGCCACTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCAAAGCTTA 765 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||||||||||||||||||||||| ||| Sbjct 766 ATCTTTGAGACAAGCATATGACTACTAGCA 795 >seq203790 Length=1361 Score = 535 bits (592), Expect = 1e-149 Identities = 422/499 (85%), Gaps = 9/499 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||||| | || |||||||||||||||||| Sbjct 9 GTACTCATTCCAATTACCAGACTCAAA-GAGCCCGGCATTGTTATTTATTGTCACTACCT 67 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| ||| Sbjct 68 CCCCGTGTTAGGATTGGGTAATTTGAGCGCCTGCTGTCTTCCTTGGATGTGGTAGCTGTT 127 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||| |||||||||||||||||||||| |||||| |||| ||| || ||||||||| Sbjct 128 TCTCAAGCTCCCTCTCCGGAATCGAACCTTAATTCTCCGTCACCTGTCACCACCATGGTA 187 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC- 239 |||||||||||||||||||||||||||||||||||| |||||||||| | ||||| || Sbjct 188 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGATGCGTCGCCAGCA 247 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG----GGCG 295 | ||||| |||||| ||| |||||| |||||||| ||| | | | | || ||| Sbjct 248 TAAAGGCTGTGCGATCCGTCGAGTTATCATGAATCATCAATGCGACGGGCAGAGCCCGCG 307 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 ||| ||||||||||||||| || ||||||| |||||||| ||| | ||| ||||||| Sbjct 308 TTGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGATTTGTTGCACGTATTAG 367 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| |||||||||| ||||| || || |||||| ||| |||||||||| Sbjct 368 CTCTAGAATTACTACGGTTATCCGAGTAGT-AGATATCATCAAACAAATTATAACTGATT 426 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTA 473 ||||||| ||||||||||||||| || | ||| | | ||||||| |||||||||||||| Sbjct 427 TAATGAGTCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTA 486 Query 474 ATCTTTGAGACAAGCATAT 492 ||||||||||||||||||| Sbjct 487 ATCTTTGAGACAAGCATAT 505 >seq200453 Length=799 Score = 390 bits (432), Expect = 3e-106 Identities = 317/378 (84%), Gaps = 7/378 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||| |||| |||| |||| || || | || |||||||||||||||||| Sbjct 377 GTACTCATTCCATTTACCAGACTCAAA-GATCCTAGCATTGTTATTTATTGTCACTACCT 319 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 318 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGTCTTCATTGGATGTGGTAGCCGTT 259 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||| |||||| ||||||||||||||||||||||| |||| ||| || ||||||||| Sbjct 258 TCTCTGGCTCCTTCTCCGGAATCGAACCCTAATTCTCCGTCACCTGTCACCACCATGGTA 199 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||||||||||||||||||||||||| |||||||||| | | ||| || Sbjct 198 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGATGCGTTGCCAGCA 139 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCC--CCGAAG--GGCG 295 | ||||| |||||| ||| |||||| |||||||| ||| | | | | ||| ||| Sbjct 138 CAAAGGCTGTGCGATCCGTCGAGTTATCATGAATCATCAATGCGACAGGCAAAGCCCGCG 79 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 || ||| ||||||||||| || ||||||| ||||||||| ||| | ||| ||||||| Sbjct 78 TTAACCTTTAATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCACGTATTAG 19 Query 355 CTCTAGAATTACCACGGT 372 |||||||||||| ||||| Sbjct 18 CTCTAGAATTACTACGGT 1 >seq197652 Length=678 Score = 233 bits (258), Expect = 6e-59 Identities = 178/205 (87%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| || ||||||| ||||||||| ||| | ||| ||||||||||||| Sbjct 4 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCACGTATTAGCTCTAG 63 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| ||| ||||| |||||| | ||| || ||| |||| |||||||||||||||| Sbjct 64 AATTACTACG-TTATCTGAGTAGTA-GATACCATTAAACAAACTATAACTGATTTAATGA 121 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479 | ||||||||||||||| || | ||| || ||||||| |||||||||||||||||||| Sbjct 122 GTCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTT 181 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 182 GAGACAAGCATATGACTACTGGCAG 206 >seq122586 Length=964 Score = 215 bits (238), Expect = 2e-53 Identities = 217/275 (79%), Gaps = 8/275 (3%) Strand=Plus/Plus Query 174 CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATC 233 ||||||||||| |||||||||||||||||||||||||||| | |||||||||| | || Sbjct 683 CATGGTAGGCCGTTATCCTACCATCGAAAGTTGATAGGGCAAATATTTGAATGATGCGTC 742 Query 234 GCCGGC-TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG---AGCCCCGA 289 ||| || | ||||| |||||| ||| |||||| |||||||| ||| | | | || Sbjct 743 GCCAGCATAAAGGCTGTGCGATCCGTCGAGTTATCATGAATCATCAAAGCAATGGGCAGA 802 Query 290 AG-GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCAT 347 | |||||| ||||||||||||||| || ||||||| |||||||| ||| | ||| Sbjct 803 GGCTGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGATTTGTTGCAC 862 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 |||||| ||||||||||| | |||||||| ||| | || || |||||| |||| ||| Sbjct 863 ATATTAGATCTAGAATTACTATGGTTATCCGAGTA-TTAGATAACATCAAACAAACTATA 921 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT 442 | ||| |||||||| |||| ||||||||| |||| Sbjct 922 AGTGA-TTAATGAGTCATTTGCAGTTTCATGGTAT 955 >seq189592 Length=476 Score = 172 bits (190), Expect = 2e-40 Identities = 286/407 (70%), Gaps = 22/407 (5%) Strand=Plus/Minus Query 99 TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 ||| || |||||| ||||||||||| ||||| |||| ||||| |||||||||||| | Sbjct 467 TTCATTAGATGTGCTAGCCGTTTCTTAGGCTTTCTCTATGGAATTGAACCCTAATTCGCA 408 Query 159 GTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 || || || |||| |||||| ||||| ||||| ||||||||||||| || | Sbjct 407 GTCACTTGTCACCACCA----AGGCCATTATCCCACCATTGAAAGTTGATAGGACATGTA 352 Query 219 TTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCAC-- 276 ||| | || ||||| | ||| | | | |||| | || | | |||||||| Sbjct 351 CTTGGACGATGTGTCGCCAACACAAAGACTGCCTATTCATCGAGCTTTCATGAATCATGA 292 Query 277 ---CAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTC 333 ||| ||| | | |||||| ||||||||||||||| || ||||||| || Sbjct 291 ATACAATGAGTAGAGTCCG-CGTTGGCCTTTTATCTAATAAATGCATCCCTTCCAGGGTT 233 Query 334 GGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA 393 | ||| | |||||||| | ||||||||| ||||||||| ||||| | ||| | Sbjct 232 CGATATTTGA---TGTATTAGTTGTAGAATTACTACGGTTATCTGAGTAGTT-GATACCA 177 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-A 452 | ||| | || | |||||||||||| | ||||||||| || | || || | Sbjct 176 TTAAA---ATTATGAATGATTTAATGAGTAA----CAGTTTCACAGTCTTAATAAATTCA 124 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 |||||| | ||||||| ||||||||||| ||||| ||||||| ||| Sbjct 123 TACTTACATATGCATGACTTAATCTTTGTAACAAGTATATGACCACT 77 >seq46059 Length=507 Score = 96.9 bits (106), Expect = 1e-17 Identities = 122/165 (74%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGAC--CCAAAAGAGCCCTGTATCAGTATTTATTGTCACTAC 58 |||||||||| |||||| | || | | || ||| ||| || |||||||||| || Sbjct 162 GTACTCATTCTAATTACCAAACTGCTACAA---CCCGATATTGCTACTTATTGTCACCAC 106 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 ||| ||||| | || |||||| ||||||| || ||| || |||||| |||||| Sbjct 105 ATCCTTGTGTCAAGGTTCA-TAATTTCCGCGCCTATTGTTTTCATTAGATGTGCTAGCCG 47 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTAC 163 ||||| ||||| |||| ||||| |||||||||||| | || || Sbjct 46 TTTCTTAGGCTTTCTCTATGGAATTGAACCCTAATTCGCAGTCAC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507152277504