Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06]
215,024 sequences; 206,414,839 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq171264 536 4e-150
seq203790 535 1e-149
seq200453 390 3e-106
seq197652 233 6e-59
seq122586 215 2e-53
seq189592 172 2e-40
seq46059 96.9 1e-17
>seq171264
Length=1179
Score = 536 bits (594), Expect = 4e-150
Identities = 430/510 (84%), Gaps = 9/510 (2%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| | || |||| || ||| | || ||||||||||||||||||
Sbjct 288 GTACTCATTCCAATTACCAAACTCAAA-GATCCCAGCATTGTTATTTATTGTCACTACCT 346
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||| |||||||||||||||| ||||||||| |||| ||||||||| ||||||||
Sbjct 347 CCCCGTGTCAGGATTGGGTAATTTGCACGCCTGCTGTCTTCATTGGATGTGATAGCCGTT 406
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||| ||||||||||||||||||||||| |||| ||| || |||||||||
Sbjct 407 TCTCAGGCTCCTTCTCCGGAATCGAACCCTAATTCTCCGTCACCTGTCACCACCATGGTA 466
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||||||||||||||||||||||||||||||||||| |||||||||| | | ||| ||
Sbjct 467 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGATGCGTTGCCAGCA 526
Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCC--CCGAAG--GGCG 295
| |||| |||||| ||| |||||| |||||||| ||| | | | | ||| |||
Sbjct 527 CAAAGGTTGTGCGATCCGTCGAGTTATCATGAATCATCAATGCGACAGGCAAAGCCCGCG 586
Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354
||| ||| ||||||||||| || ||||||| ||||||||| ||| | ||| |||||||
Sbjct 587 TTGACCTTTAATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCACGTATTAG 646
Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414
|||||||||||| |||||||||| ||||| || ||| |||||| |||| ||||||||||
Sbjct 647 CTCTAGAATTACTACGGTTATCCGAGTAGT-AGATACCATCAAACAAACTATAACTGATT 705
Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTA 473
|||||||||| |||||||||||| || | ||| | | ||||||| ||||||| |||||
Sbjct 706 TAATGAGCCACTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCAAAGCTTA 765
Query 474 ATCTTTGAGACAAGCATATGACTACTGGCA 503
|||||||||||||||||||||||||| |||
Sbjct 766 ATCTTTGAGACAAGCATATGACTACTAGCA 795
>seq203790
Length=1361
Score = 535 bits (592), Expect = 1e-149
Identities = 422/499 (85%), Gaps = 9/499 (2%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| |||| |||||| | || ||||||||||||||||||
Sbjct 9 GTACTCATTCCAATTACCAGACTCAAA-GAGCCCGGCATTGTTATTTATTGTCACTACCT 67
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct 68 CCCCGTGTTAGGATTGGGTAATTTGAGCGCCTGCTGTCTTCCTTGGATGTGGTAGCTGTT 127
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||| |||||||||||||||||||||| |||||| |||| ||| || |||||||||
Sbjct 128 TCTCAAGCTCCCTCTCCGGAATCGAACCTTAATTCTCCGTCACCTGTCACCACCATGGTA 187
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC- 239
|||||||||||||||||||||||||||||||||||| |||||||||| | ||||| ||
Sbjct 188 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGATGCGTCGCCAGCA 247
Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG----GGCG 295
| ||||| |||||| ||| |||||| |||||||| ||| | | | | || |||
Sbjct 248 TAAAGGCTGTGCGATCCGTCGAGTTATCATGAATCATCAATGCGACGGGCAGAGCCCGCG 307
Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354
||| ||||||||||||||| || ||||||| |||||||| ||| | ||| |||||||
Sbjct 308 TTGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGATTTGTTGCACGTATTAG 367
Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414
|||||||||||| |||||||||| ||||| || || |||||| ||| ||||||||||
Sbjct 368 CTCTAGAATTACTACGGTTATCCGAGTAGT-AGATATCATCAAACAAATTATAACTGATT 426
Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTA 473
||||||| ||||||||||||||| || | ||| | | ||||||| ||||||||||||||
Sbjct 427 TAATGAGTCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTA 486
Query 474 ATCTTTGAGACAAGCATAT 492
|||||||||||||||||||
Sbjct 487 ATCTTTGAGACAAGCATAT 505
>seq200453
Length=799
Score = 390 bits (432), Expect = 3e-106
Identities = 317/378 (84%), Gaps = 7/378 (2%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|||||||||||| |||| |||| |||| || || | || ||||||||||||||||||
Sbjct 377 GTACTCATTCCATTTACCAGACTCAAA-GATCCTAGCATTGTTATTTATTGTCACTACCT 319
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 318 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGTCTTCATTGGATGTGGTAGCCGTT 259
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||| |||||| ||||||||||||||||||||||| |||| ||| || |||||||||
Sbjct 258 TCTCTGGCTCCTTCTCCGGAATCGAACCCTAATTCTCCGTCACCTGTCACCACCATGGTA 199
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||||||||||||||||||||||||||||||||||| |||||||||| | | ||| ||
Sbjct 198 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGATGCGTTGCCAGCA 139
Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCC--CCGAAG--GGCG 295
| ||||| |||||| ||| |||||| |||||||| ||| | | | | ||| |||
Sbjct 138 CAAAGGCTGTGCGATCCGTCGAGTTATCATGAATCATCAATGCGACAGGCAAAGCCCGCG 79
Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354
|| ||| ||||||||||| || ||||||| ||||||||| ||| | ||| |||||||
Sbjct 78 TTAACCTTTAATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCACGTATTAG 19
Query 355 CTCTAGAATTACCACGGT 372
|||||||||||| |||||
Sbjct 18 CTCTAGAATTACTACGGT 1
>seq197652
Length=678
Score = 233 bits (258), Expect = 6e-59
Identities = 178/205 (87%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||||||||||||||| || ||||||| ||||||||| ||| | ||| |||||||||||||
Sbjct 4 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCACGTATTAGCTCTAG 63
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||| ||| ||||| |||||| | ||| || ||| |||| ||||||||||||||||
Sbjct 64 AATTACTACG-TTATCTGAGTAGTA-GATACCATTAAACAAACTATAACTGATTTAATGA 121
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479
| ||||||||||||||| || | ||| || ||||||| ||||||||||||||||||||
Sbjct 122 GTCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTT 181
Query 480 GAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||
Sbjct 182 GAGACAAGCATATGACTACTGGCAG 206
>seq122586
Length=964
Score = 215 bits (238), Expect = 2e-53
Identities = 217/275 (79%), Gaps = 8/275 (3%)
Strand=Plus/Plus
Query 174 CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATC 233
||||||||||| |||||||||||||||||||||||||||| | |||||||||| | ||
Sbjct 683 CATGGTAGGCCGTTATCCTACCATCGAAAGTTGATAGGGCAAATATTTGAATGATGCGTC 742
Query 234 GCCGGC-TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG---AGCCCCGA 289
||| || | ||||| |||||| ||| |||||| |||||||| ||| | | | ||
Sbjct 743 GCCAGCATAAAGGCTGTGCGATCCGTCGAGTTATCATGAATCATCAAAGCAATGGGCAGA 802
Query 290 AG-GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCAT 347
| |||||| ||||||||||||||| || ||||||| |||||||| ||| | |||
Sbjct 803 GGCTGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGATTTGTTGCAC 862
Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407
|||||| ||||||||||| | |||||||| ||| | || || |||||| |||| |||
Sbjct 863 ATATTAGATCTAGAATTACTATGGTTATCCGAGTA-TTAGATAACATCAAACAAACTATA 921
Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT 442
| ||| |||||||| |||| ||||||||| ||||
Sbjct 922 AGTGA-TTAATGAGTCATTTGCAGTTTCATGGTAT 955
>seq189592
Length=476
Score = 172 bits (190), Expect = 2e-40
Identities = 286/407 (70%), Gaps = 22/407 (5%)
Strand=Plus/Minus
Query 99 TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158
||| || |||||| ||||||||||| ||||| |||| ||||| |||||||||||| |
Sbjct 467 TTCATTAGATGTGCTAGCCGTTTCTTAGGCTTTCTCTATGGAATTGAACCCTAATTCGCA 408
Query 159 GTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218
|| || || |||| |||||| ||||| ||||| ||||||||||||| || |
Sbjct 407 GTCACTTGTCACCACCA----AGGCCATTATCCCACCATTGAAAGTTGATAGGACATGTA 352
Query 219 TTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCAC-- 276
||| | || ||||| | ||| | | | |||| | || | | ||||||||
Sbjct 351 CTTGGACGATGTGTCGCCAACACAAAGACTGCCTATTCATCGAGCTTTCATGAATCATGA 292
Query 277 ---CAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTC 333
||| ||| | | |||||| ||||||||||||||| || ||||||| ||
Sbjct 291 ATACAATGAGTAGAGTCCG-CGTTGGCCTTTTATCTAATAAATGCATCCCTTCCAGGGTT 233
Query 334 GGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA 393
| ||| | |||||||| | ||||||||| ||||||||| ||||| | ||| |
Sbjct 232 CGATATTTGA---TGTATTAGTTGTAGAATTACTACGGTTATCTGAGTAGTT-GATACCA 177
Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-A 452
| ||| | || | |||||||||||| | ||||||||| || | || || |
Sbjct 176 TTAAA---ATTATGAATGATTTAATGAGTAA----CAGTTTCACAGTCTTAATAAATTCA 124
Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499
|||||| | ||||||| ||||||||||| ||||| ||||||| |||
Sbjct 123 TACTTACATATGCATGACTTAATCTTTGTAACAAGTATATGACCACT 77
>seq46059
Length=507
Score = 96.9 bits (106), Expect = 1e-17
Identities = 122/165 (74%), Gaps = 6/165 (4%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGAC--CCAAAAGAGCCCTGTATCAGTATTTATTGTCACTAC 58
|||||||||| |||||| | || | | || ||| ||| || |||||||||| ||
Sbjct 162 GTACTCATTCTAATTACCAAACTGCTACAA---CCCGATATTGCTACTTATTGTCACCAC 106
Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118
||| ||||| | || |||||| ||||||| || ||| || |||||| ||||||
Sbjct 105 ATCCTTGTGTCAAGGTTCA-TAATTTCCGCGCCTATTGTTTTCATTAGATGTGCTAGCCG 47
Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTAC 163
||||| ||||| |||| ||||| |||||||||||| | || ||
Sbjct 46 TTTCTTAGGCTTTCTCTATGGAATTGAACCCTAATTCGCAGTCAC 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1507152277504
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